Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 3e-14 seq31 84.2 2e-11 >seq13 Length=672118 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTT 52789 |||||||||| || || | | ||| | ||| |||| |||||||||||||||||| Sbjct 570791 CGTCAAGGTGCGGGTGCGCACGACCAAGATCCCGCAGATCGGCGACAAGTTTGCGTCGCG 570732 Query 52790 C-ACGGCGCAAAAGGGGACGTGCGGAGC--CGTCCTGACCCAGGAGGACATGCCCTTCGA 52846 | |||| ||||||||| || ||| | ||| | | || || ||||||||||| Sbjct 570731 CCACGG-GCAAAAGGGCACCATCGGCGTGACGTACCGCTCC--GAAGACATGCCCTTTAC 570675 Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906 || ||| || | ||||||| ||||||||||||| |||||| | ||||| | ||||| Sbjct 570674 CACGGAGGGCATCACGCCCGACATCATCATCAACCCGCACGCCATCCCCTCGCGCATGAC 570615 Query 52907 C 52907 | Sbjct 570614 C 570614 >seq31 Length=224113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Plus Query 52756 GGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC-ACGGCGCAAAAGGG-GACGTGCGG 52813 ||| ||| ||||| ||||||||||| ||||| | ||||| |||||||| | ||| ||| Sbjct 198746 GGCGCCCCGAGATCGGCGACAAGTTCTCGTCGCGCCACGGC-CAAAAGGGCGTCGT-CGG 198803 Query 52814 AGCCGTCCTGACCCAGGAGGACATGCCCTT---CGACAAGGACGGGGTGGTGCCCGACCT 52870 | || | |||||||||||||||||| ||||| ||| ||| |||||| | Sbjct 198804 CATCATCGTCGACCAGGAGGACATGCCCTTTAGCGACA---GCGGCGTGTGCCCCGACAT 198860 Query 52871 CATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 ||||| ||||| |||| || ||||| | |||||||| Sbjct 198861 GATCATGAACCCGCACGGCTACCCCTCGCGCATGACCGT 198899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310003847360