Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 3e-20
seq76 91.5 9e-14
>seq12
Length=2460794
Score = 113 bits (124), Expect = 3e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| ||||| || ||||||||||||||||| ||||| || || || || ||
Sbjct 54925 AGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGG 54866
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || || ||||| || || || ||||| ||||| ||||| | ||||||
Sbjct 54865 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCC 54806
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | ||| || || |||||| |||| ||
Sbjct 54805 TTGTCTTGGATC-TTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGT 54747
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| || ||||| | || || ||||| ||||||||
Sbjct 54746 GATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708
Score = 91.5 bits (100), Expect = 9e-14
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || ||||||||||||||||||||||| || || || || ||
Sbjct 54697 AGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGG 54638
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || ||||| || || ||||| || | ||||| ||||| ||||| | ||||||
Sbjct 54637 CCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 54578
Query 34609 TTGTC 34613
|||||
Sbjct 54577 TTGTC 54573
>seq76
Length=1205562
Score = 91.5 bits (100), Expect = 9e-14
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||||| |||| || || ||||||||||| || ||||| || || ||
Sbjct 522111 CCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 522170
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || || || || || | ||||| ||||| || ||
Sbjct 522171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 522230
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | || || | || ||||| | ||| ||
Sbjct 522231 ATGCCCTCCTTGTCCTGGATC-TTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAAC 522289
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| | ||| || || ||||| || | || || || || |||||||||
Sbjct 522290 CTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 522338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729293138640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |