Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 113 3e-20 seq76 91.5 9e-14 >seq12 Length=2460794 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || ||||||||||||||||| ||||| || || || || || Sbjct 54925 AGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGG 54866 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || || ||||| ||||| ||||| | |||||| Sbjct 54865 CCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCC 54806 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | ||| || || |||||| |||| || Sbjct 54805 TTGTCTTGGATC-TTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGT 54747 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| | || || ||||| |||||||| Sbjct 54746 GATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 91.5 bits (100), Expect = 9e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||||||||||||||||||||| || || || || || Sbjct 54697 AGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGG 54638 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || || ||||| || | ||||| ||||| ||||| | |||||| Sbjct 54637 CCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 54578 Query 34609 TTGTC 34613 ||||| Sbjct 54577 TTGTC 54573 >seq76 Length=1205562 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||||| |||| || || ||||||||||| || ||||| || || || Sbjct 522111 CCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 522170 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || || || || | ||||| ||||| || || Sbjct 522171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 522230 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || || | || ||||| | ||| || Sbjct 522231 ATGCCCTCCTTGTCCTGGATC-TTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAAC 522289 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || ||||| || | || || || || ||||||||| Sbjct 522290 CTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 522338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729293138640