Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq12 113 4e-20
>seq12
Length=2460794
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||| | || || || || ||||| | ||
Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || || || || |||||||| || ||||| || || || ||
Sbjct 54768 GATACCATTGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCAG 54827
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| || || | |||||| || || |||| || | ||| | || ||||||
Sbjct 54828 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 54887
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||| || | || |||| ||||| |||| ||||||||
Sbjct 54888 ATCCAAAAGGAGAGCACTCTTCACCTGGTGCTGCGTCTGCGTGGTGGCAT 54937
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || || || || || ||||||||| | || ||||| || || || ||||
Sbjct 54252 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCT 54311
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | ||||| || ||||| ||||| || ||||| || || ||||||
Sbjct 54312 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAA 54371
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | ||| ||||| || | || ||| | ||| | ||| ||||||
Sbjct 54372 CAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTACAAC 54431
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| || |||||| ||| | ||| |||| | || |||| ||||| ||
Sbjct 54432 ATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGGTAT 54481
Score = 109 bits (120), Expect = 5e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||||||||||||| | || || || || |||||| | ||
Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | ||||| || ||||| ||||| || ||||| || || || ||
Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||||| | || | || ||||| ||| |||| || | || | ||| ||||||
Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||||||| || | || |||| | ||| |||| ||||| ||
Sbjct 54660 ATTCAAAAGGAGAGCACTCTTCACCTGGTGCTACGTCTGCGTGGTGGTAT 54709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434917965081600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |