Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 >seq12 Length=2460794 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| | || || || || ||||| | || Sbjct 54708 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAGTCTTCG 54767 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| || ||||| || || || || Sbjct 54768 GATACCATTGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGCATTCCGCCAGACCAG 54827 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || |||| || | ||| | || |||||| Sbjct 54828 CAGCGCTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGTACCCTCAGTGACTACAAC 54887 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||| || | || |||| ||||| |||| |||||||| Sbjct 54888 ATCCAAAAGGAGAGCACTCTTCACCTGGTGCTGCGTCTGCGTGGTGGCAT 54937 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || ||||| || || || |||| Sbjct 54252 ATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCGTCT 54311 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || ||||| || || |||||| Sbjct 54312 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATTCCCCCAGATCAA 54371 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || ||| | ||| | ||| |||||| Sbjct 54372 CAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTACAAC 54431 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||| ||| | ||| |||| | || |||| ||||| || Sbjct 54432 ATCCAGAAGGAGAGCACCCTGCATCTGGTGCTCCGCCTGCGTGGTGGTAT 54481 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||||||||||||| | || || || || |||||| | || Sbjct 54480 ATGCAGATCTTTGTCAAGACTCTGACCGGCAAGACGATCACGCTGGAGGTGGAATCTTCG 54539 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||| ||||| || ||||| || || || || Sbjct 54540 GATACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCGCCAGACCAG 54599 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| ||| |||| || | || | ||| |||||| Sbjct 54600 CAGCGCCTTATCTTTGCTGGCAAGCAACTGGAGGATGGCCGCACTCTGAGCGACTACAAC 54659 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || | || |||| | ||| |||| ||||| || Sbjct 54660 ATTCAAAAGGAGAGCACTCTTCACCTGGTGCTACGTCTGCGTGGTGGTAT 54709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917965081600