Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq76 91.5 1e-13 >seq12 Length=2460794 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 |||| ||||| || || |||||||| ||||| || || || ||| || || || | Sbjct 54694 CGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCA 54635 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || || ||||| ||||| ||||| ||||||||||| | || | || ||| ||| Sbjct 54634 TCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTG 54575 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| || ||| |||| | | | ||||| || ||||| |||| |||||| Sbjct 54574 TCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATC 54515 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || ||||| || || |||||||| ||||| Sbjct 54514 GTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || |||||||| ||||| || || || || || || || | || || Sbjct 54917 CACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTC 54858 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || | ||||||||||| | || | || ||| ||||| Sbjct 54857 CAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCTTG 54798 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||| || | ||| | | | ||||| |||||||| |||| |||||| | | Sbjct 54797 GATCTTCGACTTCA-CGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCGTCT 54739 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||| ||||| Sbjct 54738 TGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 >seq76 Length=1205562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || |||||||| || || || || || |||| || || || |||| || Sbjct 522129 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 522188 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| |||||||| || || || ||||||||||| | ||| | || ||| |||||| | Sbjct 522189 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 522248 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| | | | ||| || ||||| || || | || || | || Sbjct 522249 ATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCTTA 522308 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||||| || || || || ||||| ||||| |||| Sbjct 522309 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTAC 522343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429545181193040