Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 seq76 98.7 7e-16 >seq12 Length=2460794 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| || || || || ||||||||||| ||||| || Sbjct 54249 AATATGCAGATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAGGTTGAGTCG 54308 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | || ||||| || || | || ||||| Sbjct 54309 TCTGACACCATCGACAATGTCAAGTCGAAGA-TTCAGGACAAGGAGGGCATTCCCCCAGA 54367 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||||| | || || || ||||| || || || |||| ||||| | |||| || Sbjct 54368 TCAACAGCGCCTTATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGAGCGACTA 54427 Query 23787 CAACATACAAAAAGAG 23802 |||||| || || ||| Sbjct 54428 CAACATCCAGAAGGAG 54443 >seq76 Length=1205562 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || || || ||||| ||||| ||| || Sbjct 522337 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATTACCCTCGAGGTTGAGTCCTCG 522278 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || ||||| || Sbjct 522277 GACACGATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 522219 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || ||||| || ||||| |||| ||||| | ||| ||||| Sbjct 522218 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAA 522159 Query 23790 CATACAAAAAGAG 23802 ||| || || ||| Sbjct 522158 CATCCAGAAGGAG 522146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009270440640