Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq45 141 2e-28 seq12 140 8e-28 seq80 102 2e-16 >seq45 Length=1349219 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| |||| || || | ||||| Sbjct 1003353 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 1003294 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || |||||||| ||||| || || |||||||| Sbjct 1003293 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCC 1003234 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| |||| || || || || ||||| ||| Sbjct 1003233 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTC 1003174 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 1003173 TTGCCAGT 1003166 >seq12 Length=2460794 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||| || ||||| | ||||| ||| || ||| | ||||| Sbjct 54691 AGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCC 54632 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| |||||||| || || ||||| ||||| || || |||||||| Sbjct 54631 TCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 54572 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| |||||||| || || | |||||| || | |||||||||| Sbjct 54571 TGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCACCTCCAGCGTGATCGTC 54512 Query 225682 TTGCCCGTCAAAGTTTT 225698 ||||| |||| ||| || Sbjct 54511 TTGCCGGTCAGAGTCTT 54495 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| |||||| || ||||||| ||||| || | || Sbjct 54929 ACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGT 54870 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| | || || ||||| |||||||| || Sbjct 54869 ACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCC 54810 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| |||||| || ||||| || || | ||||| || | Sbjct 54809 CTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAG 54750 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||||||||||||| |||| ||| || Sbjct 54749 CGTGATCGTCTTGCCGGTCAGAGTCTT 54723 Score = 120 bits (132), Expect = 7e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || || || || || |||| ||||| || | || Sbjct 55156 CGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTA 55097 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||| || ||||||||||| | || || ||||| |||||||| || Sbjct 55096 CGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCC 55037 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| ||| || ||||| ||||| || | || || || | | Sbjct 55036 TCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGC 54977 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | |||||| Sbjct 54976 GTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || ||| || || |||| ||||| ||| || || | || || Sbjct 54463 AGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCC 54404 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 54403 TCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTCC 54344 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| || | || || || | ||||| ||| Sbjct 54343 TGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGTC 54284 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | || || | ||| | ||||| || Sbjct 54283 TTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249 >seq80 Length=25567 Score = 102 bits (112), Expect = 2e-16 Identities = 198/284 (70%), Gaps = 9/284 (3%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTATAAG 7505 ||| ||||||||| ||||| || ||||| |||||| || ||| | | ||||| Sbjct 3004 TATCTAATATTTGCATTATTTTCAGG-ATTATTAGGTACAGCTTTCTCTGTATTAATAAG 3062 Query 7506 GTTAGAA-TTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTACAAC 7563 | ||| ||||| | || ||| |||| |||| | | |||| ||| | ||||| Sbjct 3063 AATGGAACTTAGCGGA-CCAGGTGTTCAATATATCGCA-GATAAT---CAATTATACAAT 3117 Query 7564 GTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATA 7623 || || || || || || | | ||||| |||||| | |||||||| | | | ||| Sbjct 3118 AGCATAATAACAGCTCACGCTATATTAATGATATTCTTTATGGTTATGCCTGCTTTAATA 3177 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || |||||||| |||| || | |||||| | | |||| ||||||||||| || || Sbjct 3178 GGTGGTTTCGGTAATTTCTTATTACCTTTATTAGTAGGTGGACCTGATATGGCATTCCCT 3237 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | || ||||||||||| |||||| |||| ||| ||||| Sbjct 3238 AGATTAAATAATATAAGTTTCTGATTATTACCTCCTAGTTTATT 3281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529977655520