Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq13 91.5 1e-13 seq1 82.4 6e-11 >seq13 Length=672118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 53494 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CT 53552 |||||||||| || || | || ||| | ||| |||| |||||||||||||| || | Sbjct 570791 CGTCAAGGTGCGGGTGCGCACGACCAAGATCCCGCAGATCGGCGACAAGTTTGCGTCGCG 570732 Query 53553 TCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCGA 53610 ||||| ||||||||| || ||| | | || | | ||| | || |||||||||| Sbjct 570731 CCACGG-GCAAAAGGGCACCATCGGCGTGACGTACCG-CTCCGAAG-ACATGCCCTTTAC 570675 Query 53611 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 53670 || ||| || | ||||||| ||||||||||||| |||||| | ||||| | ||||| Sbjct 570674 CACGGAGGGCATCACGCCCGACATCATCATCAACCCGCACGCCATCCCCTCGCGCATGAC 570615 >seq1 Length=2664519 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29624 GGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCT 29683 ||||||| ||| | ||| | ||||| || ||||||| |||||||| || || Sbjct 1365423 GGCTCCCGCTCCAACTGGAGTTGCAGCGCCTCAGTATGGTCAACATAGACGTGTGCGTCA 1365364 Query 29684 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29742 |||| ||| | ||| || |||||| | || || ||| |||| ||||| | ||| Sbjct 1365363 CCCATAACGTGCGTCAAGCT-TCCCGGAACCAGGTCGCAGACTCGAGCAATCATATGCGT 1365305 Query 29743 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTG 29802 | || | ||||| || || || || ||||| ||||| |||||||| | || | ||| Sbjct 1365304 CAACAGGGCATAGCTTGCAATATTGAACGGCACTCCGAGACCCATGTCGCAGGAGCGCTG 1365245 Query 29803 GTAGAGCTGGCA 29814 |||||||||||| Sbjct 1365244 GTAGAGCTGGCA 1365233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406162803990880