Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 8e-15 seq76 95.1 3e-14 seq45 91.5 3e-13 >seq12 Length=2460794 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || |||||||| ||| |||||||||||||| || | || | ||||| Sbjct 54919 AGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTGAGGGTACGGCCATCC 54860 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| | | ||||||||| | || || || ||||| | Sbjct 54859 TCCAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGT 54802 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || || || | || | | | || ||| ||| || || || || || | Sbjct 54801 CTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACCTCCAGCGTGATCG 54742 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||| || |||| |||||| Sbjct 54741 TCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || || ||| || ||||||||||| ||| | || | || || Sbjct 54464 GAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTC 54405 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| ||||| | ||| || || | | || || ||||| || Sbjct 54404 CTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGAATGCCCTCCTTGTC 54345 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || |||||| | || | | |||| || ||| || || ||||| || || Sbjct 54344 CTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAACCTCGAGAGTGATGGT 54285 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| ||||||| |||||| || Sbjct 54284 CTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| || | || | ||||| Sbjct 55147 AGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCC 55088 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| | | ||||||||| | || || || ||||| || Sbjct 55087 TCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 55028 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | |||| ||| ||| || || || || || || Sbjct 55027 TGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTC 54968 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||| | ||||| Sbjct 54967 TTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936 >seq76 Length=1205562 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||| || ||||||||||| |||| | || | || || Sbjct 522126 AGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 522185 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | || || ||||| || Sbjct 522186 TCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 522245 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | |||| || ||| || || || ||||| || Sbjct 522246 TGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTC 522305 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| ||||| ||||||| |||||| Sbjct 522306 TTACCCGTGAGGGTCTTGACGAAGATCTGCAT 522337 >seq45 Length=1349219 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 1003354 GAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 1003295 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || |||||||| || | ||| ||||| | || ||| || ||||| || Sbjct 1003294 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTC 1003235 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | |||| || ||| || || | || || || Sbjct 1003234 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGT 1003175 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAG 152096 ||||| ||||| |||||||||||| Sbjct 1003174 CTTGCCAGTGAGGGTCTTCACGAAG 1003150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819617333680