Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13]
80 sequences; 34,270,891 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq12 197 3e-45
seq45 168 1e-36
seq76 163 6e-35
seq25 91.5 3e-13
seq1 91.5 3e-13
>seq12
Length=2460794
Score = 197 bits (218), Expect = 3e-45
Identities = 180/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || ||||| || | ||||| || ||||||||||||||||||
Sbjct 54934 CCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACTG 54875
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| || || || ||||| |||||||| || || ||||| ||||
Sbjct 54874 AGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 54815
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| | || ||| | || || || ||||||| || ||
Sbjct 54814 ATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGACTCCACC 54755
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| || |||| |||||| || || ||||||||
Sbjct 54754 TCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || ||||| || | ||||| || ||||| |||||||||||
Sbjct 54707 ACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCT 54648
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| ||||| || || |||||||| | || || ||||| |||
Sbjct 54647 CAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGG 54588
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| || ||||| | || || | ||||| || ||||||| ||| ||
Sbjct 54587 GATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAAGATTCCAC 54528
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| || |||| |||||| || || ||||||||
Sbjct 54527 CTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480
Score = 165 bits (182), Expect = 2e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || |||||||| | ||||| || || ||||||||||||||
Sbjct 54479 ACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 54420
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || || || | || ||||| || ||
Sbjct 54419 CAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGG 54360
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| || ||||| | || || | ||||| ||||| || | || ||
Sbjct 54359 AATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCAGACGACTCAAC 54300
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
||||||||||| ||||| || || | ||||| ||||| |||||||| ||
Sbjct 54299 CTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || || || || || ||||| || | ||| || || |||||||||||||||
Sbjct 55162 CCGCCGCGAAGCCGCAGAACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTG 55103
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||||||||| || ||||| || || |||||||| || || ||||| ||||
Sbjct 55102 AGGGTACGGCCATCCTCCAGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGA 55043
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| || ||||| | || ||| | ||||| |||||||||| || ||
Sbjct 55042 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACGTTGTCGATCGTGTCCGAAGACTCAACC 54983
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||||||||| || || | ||||| ||||| || |||||
Sbjct 54982 TCCAGCGTGATCGTCTTGCCGGTAAGGGTCTTGACGAAAATTTGCAT 54936
>seq45
Length=1349219
Score = 168 bits (186), Expect = 1e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || ||||| || | ||| || || |||||||||||||| |
Sbjct 1003368 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1003309
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || ||||||| || ||||||||| |||
Sbjct 1003308 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGG 1003249
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||| |||||||| | || ||| | ||||| |||||||| | |||||
Sbjct 1003248 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 1003189
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| | ||||| ||||| || || | ||||| |||||
Sbjct 1003188 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151
>seq76
Length=1205562
Score = 163 bits (180), Expect = 6e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || ||||| || | ||||| || || |||||||||||||| |
Sbjct 522110 ACCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 522169
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| ||||| || || || || || ||||||| || || ||||| ||
Sbjct 522170 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGG 522229
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | ||||| |||||||| | || ||
Sbjct 522230 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCAAC 522289
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||||||||| | ||||| ||||| ||||||||
Sbjct 522290 CTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 522337
>seq25
Length=315089
Score = 91.5 bits (100), Expect = 3e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252
|||||| | ||| ||| | || ||| ||| |||||||||| | |||||| |
Sbjct 43214 GAGTTCCTGACCGAGGCTCTGCCGTGCGCTCTGCTCGGCATGAACTCCACCCTCATGAAG 43155
Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312
|| || || || ||||| ||||| || | | ||||| || || ||||||| || |
Sbjct 43154 CAGTACATTGAGTTCGTGGCTGACCGCCTGCTGGTGGCTCTCGGCAACGAGAAGGTCTTC 43095
Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372
| || |||||||||| || |||||| ||| || || || || || ||||||
Sbjct 43094 CGCGTCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTC 43035
Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
||||| ||||| ||| |||| || || | | |||||||
Sbjct 43034 TTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCGGTGT 42997
>seq1
Length=2664519
Score = 91.5 bits (100), Expect = 3e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 317029 GGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCA 317088
||||| || || | ||| |||| || || | |||||| ||||||||||| | |||
Sbjct 382108 GGGAAGCCCTCGACCTGCTCGTTGTTGATGGCGCGCATCAGAGTCGACTTGCCGGAACCG 382049
Query 317089 TTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGA 317148
||||||||||| ||||| || || | || |||||| | | ||| | ||||||
Sbjct 382048 TTGGGGCCGCACAGACCGTAGCGCTGGCCACGCTTCAGGCGCAGGCTGGTCTGGTTCAGC 381989
Query 317149 AGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201
|||||||| |||| || || || |||||| || | ||||||||||| ||
Sbjct 381988 AGAATCTTGGCACCGTAGGCGAGCGAGAACGTGCAGTTGCACAGGTCCTCACC 381936
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738127092320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |