Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq76 165 6e-36 seq12 161 7e-35 seq45 122 6e-23 >seq76 Length=1205562 Score = 165 bits (182), Expect = 6e-36 Identities = 166/214 (78%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||||||||||| ||||||||||| |||| ||| ||| |||| ||| Sbjct 522129 ACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 522188 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||||| |||||||| |||| || | || ||||| ||| Sbjct 522189 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 522248 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || ||||| | ||| || ||||| | ||||| |||| Sbjct 522249 ATCTTGGACTTGACATTGT--CGATCGTGTCCGAGGACTCAACCTCGAGGGTAATGGTCT 522306 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||||||| |||||||| |||||||| Sbjct 522307 TACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 522340 >seq12 Length=2460794 Score = 161 bits (178), Expect = 7e-35 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||||||||||| ||||||||||||||||||||||| Sbjct 54941 TTGCATGCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTA 54882 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| || | || ||||||||||| ||||| |||||||| |||||||| || Sbjct 54881 GTCACTGAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTC 54822 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | || ||||| || |||||| ||||| | | ||||| || | || Sbjct 54821 TGGCGGAATGCCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCAATGGTATCCGAAGA 54762 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| ||| |||||||| || || || ||||| || ||||| ||||| Sbjct 54761 CTCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 149 bits (164), Expect = 5e-31 Identities = 174/233 (75%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| |||||||||||||| |||||||| || Sbjct 54710 CATACCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTC 54651 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||| ||||| || |||||||| | |||||||| |||| Sbjct 54650 GCTCAGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGG 54591 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| |||||| ||| || ||| | ||||| || | ||| Sbjct 54590 CGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CGATGGTATCCGAAGAT 54533 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| ||| |||||||| || || || ||||| || ||||| ||||| Sbjct 54532 TCCACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| |||||| ||||||||||| || ||| || | || ||| Sbjct 55144 ACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCACTGAGGGTACGGCCATCCTCC 55085 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || |||||||| |||||||| |||| || | || ||||| ||| Sbjct 55084 AGCTGTTTTCCAGCGAAGATCAAGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 55025 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| || ||| | || ||||| | || || ||||||| ||| |||||||| Sbjct 55024 ATCTTCGACTT-AACGTTGTCGATCGTGTCCGAAGACTCAACCTCCAGCGTGATCGTCTT 54966 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || |||||||| ||||| ||||||||| Sbjct 54965 GCCGGTAAGGGTCTTGACGAAAATTTGCATG 54935 Score = 127 bits (140), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||| || || ||||||||||| ||||||||||| || Sbjct 54482 CATACCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 54423 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| || |||||||| || || || || | ||||| ||||||| Sbjct 54422 GCTCAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGG 54363 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| ||| |||||| ||| || ||| | |||||||| | || Sbjct 54362 GGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGT--CGATGGTGTCAGACGAC 54305 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || ||||| || || |||||||| |||||||| ||||| Sbjct 54304 TCAACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCAT 54252 >seq45 Length=1349219 Score = 122 bits (134), Expect = 6e-23 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| || ||| |||||| ||||||||||| |||| || ||| | || || Sbjct 1003351 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 1003292 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || ||||||| ||||| || || | || | || ||||| ||| Sbjct 1003291 CAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGGGATGCCCTCCTTGTCCTG 1003232 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | ||| || ||||||| || || ||||| Sbjct 1003231 GATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTT 1003172 Query 44308 TCCCGTGAGGGTCTTCACGAAG 44329 || |||||||||||||||||| Sbjct 1003171 GCCAGTGAGGGTCTTCACGAAG 1003150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990049009360