Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Graphilbum_20fragrans_20[genbank_20GCA_5F001513895.1_202016-01-13] 80 sequences; 34,270,891 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq76 188 7e-43 seq12 159 3e-34 seq45 138 1e-27 seq13 86.0 6e-12 >seq76 Length=1205562 Score = 188 bits (208), Expect = 7e-43 Identities = 181/230 (79%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| ||||| |||||||||||||| ||||| ||||||||| Sbjct 522111 CCGCCGCGAAGACGCAGGACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 522170 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| ||||||||||| ||||| | |||| Sbjct 522171 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 522230 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 522231 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATCGTGTCCGAGGACTCAA 522288 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || |||||||| || ||||| ||||| ||||||||| Sbjct 522289 CCTCGAGGGTAATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 522338 >seq12 Length=2460794 Score = 159 bits (176), Expect = 3e-34 Identities = 178/233 (76%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||||||||| |||||||||||||| ||||| |||||| Sbjct 54478 CCACCACGCAGGCGGAGCACCAGATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 54419 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||| ||||| || ||||||||||| || | |||| Sbjct 54418 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATAAGGCGCTGTTGATCTGGGGGA 54359 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | || | ||| || | || | ||||| |||||| Sbjct 54358 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTGTCAGACGACTCA 54302 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || || || || || || || ||||| ||||| |||||||| || Sbjct 54301 ACCTCGAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATCTGCATATT 54249 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| || || ||||||||||| || ||||| ||||| Sbjct 54935 GCCACCACGCAGACGCAGCACCAGGTGAAGAGTGCTCTCCTTTTGGATGTTGTAGTCACT 54876 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||| || | || || |||||||| |||||||| |||| |||||| ||||| | || Sbjct 54875 GAGGGTACGGCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGCGG 54816 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || ||||||||| ||| || |||| ||| | | | || || ||||||| Sbjct 54815 AATGCCCTCCTTGTCTTGGATCTTCGACTTC-ACGTTGTCAATGGTATCCGAAGACTCCA 54757 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 54756 CCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54708 Score = 136 bits (150), Expect = 4e-27 Identities = 171/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||||| |||||| || || ||||||||||| |||||||| |||||| Sbjct 54706 CCACCACGCAGACGTAGCACCAGGTGAAGAGTGCTCTCCTTTTGAATGTTGTAGTCGCTC 54647 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || || |||||||| || || || |||||||| ||||| | || Sbjct 54646 AGAGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCTGGCGGG 54587 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || |||||||||| ||| | || | ||| || | || | || || || ||| Sbjct 54586 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTATCCGAAGATTCC 54530 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| ||| ||||| || || ||||| ||||| || || |||||||| Sbjct 54529 ACCTCCAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 54480 >seq45 Length=1349219 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| || || ||| ||||||||| ||||| |||||||| Sbjct 1003369 GCCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1003310 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || ||||||||||| ||||| ||||||||||||||||| | || Sbjct 1003309 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCAGGCGG 1003250 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||| ||| | | | ||||| ||||| | Sbjct 1003249 GATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATCGTGTCCGAGGACTCGA 1003191 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 |||||| || || || || || || || ||||| ||||| Sbjct 1003190 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAA 1003151 >seq13 Length=672118 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 85806 GCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTCATCGAC 85865 || || || |||||||||||| |||||| ||||||| |||||||| || || ||| Sbjct 61171 GCCCCGCGCTCCGGCCTCGCCGCTAAGCACTTTATCGACACCGGCGCCGGCGTGATTGAC 61230 Query 85866 GCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGC 85910 |||||||||||||| |||| | | | ||||||||||||||| Sbjct 61231 GCCGACTACCGCGGCCACGTGCGCGTGCTGCTCTTCAACCACGGC 61275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303537696000