Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq127 91.5 3e-13 >seq127 Length=123883 Score = 91.5 bits (100), Expect = 3e-13 Identities = 276/420 (66%), Gaps = 10/420 (2%) Strand=Plus/Minus Query 282392 CACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGACTGGGAAAACA 282451 ||| || ||||||||||||| | ||| || ||||| | || | |||||||| Sbjct 50993 CACAATGGGTGTGATGAACTCGACGAGGAAGCCAGGAATCTTGAGTAAGCTGGGAAATTG 50934 Query 282452 GCTATGGAAAAAGTTCATGACAAGACCA--GAAATGTGAGTTCCGTCAACATCCGCGTCG 282509 || || ||||| |||| ||||| || ||| ||| || || ||| || Sbjct 50933 TGCGTGCAAGAAGTTGATGAGCAGACCTTTGATATGGGAG--CCATCGTGGTCCTGATCA 50876 Query 282510 GTCATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACACTTTACCGGTT 282569 ||||||||||| | ||||||||||| ||| |||||| | || ||||| | Sbjct 50875 GTCATGATCATTAGATGACCGTATCGAAGACCTTTGGTGTCTGTATAGACTTTCTTGTGC 50816 Query 282570 TGAAGGCCCA-AAATTTGTTTGAGCGCGGTGATTTCTTCGTTCTTTGTGATACTTGCCAC 282628 || ||||||| ||| || ||| | | || || | |||||| | ||| | | Sbjct 50815 TGCAGGCCCAGAAAGTTCTTTATGTTTTG-AATCTCCTTGTTCTTCGAGATCTGATCGAT 50757 Query 282629 AGATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCG 282688 |||||||| || ||||| ||||| ||||| | || ||||| ||||| || | ||| Sbjct 50756 GGATGCATCACGCACGTTGAGCAATTTACCTCTCAGGGGAAAGACACCCAATGTATCGGC 50697 Query 282689 ACCGACCACGGACAGTCCTGCAATTGCAA--GTGTTGCTGCGGAATCTCCCTCCGTCAAG 282746 |||||| || | | ||||| || || | ||| || || || ||||| |||||| Sbjct 50696 ACCGACGACTGCACGGCCTGCCATAGCCATCCCCTTG--GCTGACTCACCCTCGGTCAAG 50639 Query 282747 ATGAGAGTACACATCTTACTATGATTTGTGCCCGCCCATGCAGCATCGTTTAGTTTAGGG 282806 || || ||||| | | | || || ||||| ||| | ||||| | ||||| ||| Sbjct 50638 ATCAGCGTACAGAGATGGCCATTCTTGGTGCCTGCCAAGTTCGCATCTGTGAGTTTCGGG 50579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821058918710