Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq85 167 2e-36 >seq85 Length=245923 Score = 167 bits (184), Expect = 2e-36 Identities = 536/821 (65%), Gaps = 17/821 (2%) Strand=Plus/Plus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 ||||||| || | || || || ||||| || || || |||||| ||||||| || |||| Sbjct 84152 TTTGGTAGTCACCCACTCGCTTCTCGAAGAAATTGGTCTTGCCCGCTAGAGAGATGTTCT 84211 Query 16734 CCATGAAATCAAAAGGATTAGT-AGCTGAAAATATTTTAGAGTACCCC-AGTTCGGCGAT 16791 |||| || ||||| ||||| || | || | || || | ||||| | || | | Sbjct 84212 CCATAAAGTCAAACGGATTGGTGACCTTGTAGTACTTCGGGTTACCCATACTTA--CCAA 84269 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATAA 16850 | | || || || || || || || || ||| | |||| ||||||| || | | Sbjct 84270 CAGCCGGTCGGCAACGAACTCAATGTACTGCTTCATGAGCTTCG-AGTTCATGCCCAGTA 84328 Query 16851 GACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAA 16910 || || || || || || || | ||| |||||| || || || || || | Sbjct 84329 GAGCAACGGGGAGCGCCTCGGTGAGGAATTCTTGCTCGATCTGGACGGCCTCGACGATGA 84388 Query 16911 TA--CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGC 16968 | || | | |||||| || || || ||||| || | || ||| || || Sbjct 84389 TGGCCTGGATAA--GTTCCTTTGAGGGGCGGTGGTTAAGGTGCGAGAGCAGCAGGCACGC 84446 Query 16969 GAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGG 17028 || ||| || | |||||||| | | |||||||||||| || || || | ||||| Sbjct 84447 AAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCGGG 84506 Query 17029 CATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACC 17088 ||| ||||| ||||| | ||| || || | |||||| || || || ||||| ||||| Sbjct 84507 CATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATACC 84566 Query 17089 CTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCA 17148 || || | ||||| |||| | || | ||| | || | ||| | |||||| Sbjct 84567 TTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTCGATCTGAAATCCA 84626 Query 17149 TTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAA 17208 | |||| || ||||| | | |||||| || || || ||||| | || | Sbjct 84627 GCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCGAAGAG 84686 Query 17209 TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGA 17268 | | | ||| || | | || | || || || || ||||| || |||||||||| Sbjct 84687 GTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACATTTCGCT 84746 Query 17269 GTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAAC 17328 ||| ||||| ||||| ||||| || || |||||||| |||||||| | | ||| || Sbjct 84747 GTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGGGGACTTGGAC 84806 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| || |||| || || | || || ||||| ||||||||||| |||||||| || Sbjct 84807 TTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAA 84866 Query 17389 CGCCAATATATGCTTAATGAAATATTTTTCGTC--CGGTGTAAG---AACGCGCCAGTCC 17443 || | | || || ||| || |||||| || || || | ||||||| Sbjct 84867 AGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTG--AGCTTGTGGTGCCAGTCG 84924 Query 17444 TTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAA 17484 | | |||||| || | || |||||||||| |||||| || Sbjct 84925 TGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAA 84965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517544196157560