Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq85 125 7e-24 >seq85 Length=245923 Score = 125 bits (138), Expect = 7e-24 Identities = 382/590 (65%), Gaps = 3/590 (1%) Strand=Plus/Plus Query 16178 TGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTG 16237 ||||| ||||| | || || ||||| |||||| || | || ||||| | | | Sbjct 84418 TGGTTAAGGTGCGAGAGCAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAG 84477 Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 |||||||||||||| || || | || ||||| ||||| ||||| | |||||| || Sbjct 84478 ATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATG 84537 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357 | || || || || || ||||| ||||| || |||| ||||| |||| | || | Sbjct 84538 GAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGG 84597 Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417 || | || | ||| || |||||| | ||||||| ||||| | | | || Sbjct 84598 GCAAAGGTGGACTCTCGATCTGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATG 84657 Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477 ||| || || || ||||| | || | | | | ||| || || | || || Sbjct 84658 CAAGGAATTGTATCGATGGCGTCGAAGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTAT 84717 Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537 || ||||| || | ||||||||| ||| ||||| || || ||||| || ||| Sbjct 84718 GTGTCAATGAGAAGTGAGTACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCA 84777 Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCA 16597 || ||||| || || || | | ||| ||||| || | || || || | |||||||| Sbjct 84778 TAAAAGCAGCGGGCTTCGGGGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCG 84837 Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657 || ||||| ||||| || || || || || | | ||| || ||| || |||| Sbjct 84838 TTGACGATGCCGTCCGAGGCGGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCG 84897 Query 16658 TCAGATGTAAGAAT---ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714 ||| | || | ||||| || | | |||||| || | || |||||||| | Sbjct 84898 TCATCGTTGAGCTTGTGGTGCCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCG 84957 Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 ||||| ||| || | || || || || || |||||| |||| ||| Sbjct 84958 GTCCAGAAGGAGGCTTCGGCTTTCTTGTAGGCTTGCCAAATCTCATGGTA 85007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413012788440