Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq85 125 7e-24
>seq85
Length=245923
Score = 125 bits (138), Expect = 7e-24
Identities = 382/590 (65%), Gaps = 3/590 (1%)
Strand=Plus/Plus
Query 16178 TGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTG 16237
||||| ||||| | || || ||||| |||||| || | || ||||| | | |
Sbjct 84418 TGGTTAAGGTGCGAGAGCAGCAGGCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAG 84477
Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297
|||||||||||||| || || | || ||||| ||||| ||||| | |||||| ||
Sbjct 84478 ATAAGTTCGTTGGAGAAGGTAAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATG 84537
Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCC 16357
| || || || || || ||||| ||||| || |||| ||||| |||| | || |
Sbjct 84538 GAGGCGAAGGAGCCGGAGAAGAAGATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGG 84597
Query 16358 GCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATA 16417
|| | || | ||| || |||||| | ||||||| ||||| | | | ||
Sbjct 84598 GCAAAGGTGGACTCTCGATCTGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATG 84657
Query 16418 CAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATAC 16477
||| || || || ||||| | || | | | | ||| || || | || ||
Sbjct 84658 CAAGGAATTGTATCGATGGCGTCGAAGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTAT 84717
Query 16478 GTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCA 16537
|| ||||| || | ||||||||| ||| ||||| || || ||||| || |||
Sbjct 84718 GTGTCAATGAGAAGTGAGTACATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCA 84777
Query 16538 TAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCA 16597
|| ||||| || || || | | ||| ||||| || | || || || | ||||||||
Sbjct 84778 TAAAAGCAGCGGGCTTCGGGGACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCG 84837
Query 16598 TTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCG 16657
|| ||||| ||||| || || || || || | | ||| || ||| || ||||
Sbjct 84838 TTGACGATGCCGTCCGAGGCGGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCG 84897
Query 16658 TCAGATGTAAGAAT---ATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGC 16714
||| | || | ||||| || | | |||||| || | || |||||||| |
Sbjct 84898 TCATCGTTGAGCTTGTGGTGCCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCG 84957
Query 16715 GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764
||||| ||| || | || || || || || |||||| |||| |||
Sbjct 84958 GTCCAGAAGGAGGCTTCGGCTTTCTTGTAGGCTTGCCAAATCTCATGGTA 85007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511413012788440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |