Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq123 210 3e-49
>seq123
Length=109856
Score = 210 bits (232), Expect = 3e-49
Identities = 1295/2062 (63%), Gaps = 43/2062 (2%)
Strand=Plus/Minus
Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867
|||||||| || || || || || | | || || ||||||||||| || || || |||
Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146
Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927
|| | |||| || || |||||| || | ||| | || || | |
Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086
Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987
|| || |||| || || ||||| |||||||| || | || || ||||| | |||
Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026
Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047
|| || | || | || ||||| | ||| || || | | || || || ||||| |
Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966
Query 53048 TTTG-TA--TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104
|||| || |||||||| || || || || | || || || ||||| || | || |
Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906
Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164
|| | || | | || | || || ||||| || || |||||||| ||
Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846
Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224
| || || | || | ||| || || ||||| || || | | |||||||| |||
Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786
Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284
|| || || | || || || |||||||| ||||| || | | | ||||| || |||
Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726
Query 53285 TA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 53343
|| || | || || |||| | | ||||| | |||||| || | ||| |
Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667
Query 53344 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 53403
||||| ||| | | | ||| || |||| || ||||||||
Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607
Query 53404 TCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 53460
|| ||||||| || || ||||| || | || ||| || || || ||
Sbjct 48606 ACCAAGTTCCTTCGCA---AGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550
Query 53461 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG-AA 53519
||| || | | || || | | |||||| | ||| || || | | |||| | ||
Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491
Query 53520 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 53579
|| || || || | ||||||||||||| ||| || |||| ||||| || |
Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTC 48432
Query 53580 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACA 53638
|||| ||||| || | || || || || || || || || || || ||||| |
Sbjct 48431 TTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTC 48372
Query 53639 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT------AC- 53691
|| || | || || || | |||| | ||| ||| |||| || || | | ||
Sbjct 48371 ATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACG 48312
Query 53692 AAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 53751
||| ||| ||| |||| ||| |||| ||| || ||||| ||||| | || | | ||
Sbjct 48311 AAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTA 48253
Query 53752 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 53811
| || || || ||||| | || |||||||||| || || || | ||||||||
Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193
Query 53812 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTC 53871
||| |||| || || ||||| || || |||||||| | ||||| ||| |||||| ||
Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133
Query 53872 TATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT--CTT--TTCTC 53927
| || || | ||| | | ||||| ||| | | | || ||| |||||
Sbjct 48132 CAAGATGGCATACCACAACTTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTC 48073
Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT---CCAG 53984
| | | | | | | ||| ||||| || || | || ||| || || |
Sbjct 48072 ATACTTCTCGAACAGAGCCTCG----AACTCCTCACCGTAG-CA--GTCAGATAAACCTG 48020
Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044
|| ||| | || || | | | ||| ||||||| | || || || ||||| || |
Sbjct 48019 GAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACA 47960
Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104
|||| ||| |||| ||||| ||| | ||| | | | | ||| || ||||| |
Sbjct 47959 GATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGT 47900
Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164
|||| || | || || | | | ||| | ||||| || || | ||| | || |
Sbjct 47899 TCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAA 47840
Query 54165 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224
| ||||| | ||||| || ||||| || | ||||| ||| || || | | | ||||
Sbjct 47839 AGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTC 47780
Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284
| ||| || | || || || |||| || || || || | ||||||| ||| | |
Sbjct 47779 GGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCG 47720
Query 54285 CACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATC 54344
| ||||| || | | || || || || || | || ||||| | |||||
Sbjct 47719 CTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGG 47660
Query 54345 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 54404
|||| |||||| ||||| ||||| || || ||| |||||| | | |||||
Sbjct 47659 TCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATG 47600
Query 54405 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 54464
|||||||| | || || ||||| || | ||| || |||||||| || |||
Sbjct 47599 ATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACA 47540
Query 54465 ATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTC 54524
|| | || | |||||||| ||||| || | || ||||| | |||||| |
Sbjct 47539 TCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGC 47480
Query 54525 CTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--CTTGTTGTTTATTTT 54582
| || | || ||||| | ||||||||| |||||||| | || ||| |||| |||
Sbjct 47479 CAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTCATATTT 47422
Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642
|| | || ||| |||||| || || || |||||||||||||| ||| ||||| ||
Sbjct 47421 GAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTC 47362
Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702
||| | ||| | |||||||| | || | | | || ||| ||| | ||
Sbjct 47361 GTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTCCT 47303
Query 54703 T-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCA 54761
| || || ||||| || || | ||||| || |||||||||||||| | | || | |
Sbjct 47302 TGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGTGA 47243
Query 54762 TCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGG 54821
| ||| | || | || || || | ||||| ||||| || || || || | || |
Sbjct 47242 TGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGCAG 47183
Query 54822 CTAGAATGGCATAATCCGGATG 54843
| || ||||| ||||| |||||
Sbjct 47182 CGAGGATGGCGTAATCTGGATG 47161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593719989530160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |