Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq154 104 2e-17 >seq154 Length=71981 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||||| || ||||| | |||| || ||||| || |||||||| || || | | Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | |||| | | ||||||||||||||||| || | || | | ||||||||| || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || || || | ||| |||||| | ||| | Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||| ||||| || | ||||||||||| |||||||| Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || || || || |||||||| ||||| | Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| || ||||| || || || |||| || | |||||||| || Sbjct 40956 AAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGA 40897 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || | | ||| || |||| || || Sbjct 40896 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACC 40837 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || | ||| ||||||||||| || | || ||||| || || |||||||||| Sbjct 40836 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTGA 40785 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| |||| || |||||| |||||||| || || | Sbjct 41700 CCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAA 41641 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||| || || || ||| | || |||| ||||| ||| || Sbjct 41640 AGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGA 41581 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | ||| ||| ||| | ||| Sbjct 41580 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACC 41521 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| ||||||||||| | || || || || |||||||| Sbjct 41520 TCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258083256372