Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq154 104 2e-17
>seq154
Length=71981
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| ||||||| || ||||| | |||| || ||||| || |||||||| || || | |
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| |||| | | ||||||||||||||||| || | || | | ||||||||| ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| ||| || || || | ||| |||||| | ||| |
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | || ||||| ||||| || | ||||||||||| ||||||||
Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| || | || || || || |||||||| ||||| |
Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| | |||| || ||||| || || || |||| || | |||||||| ||
Sbjct 40956 AAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGA 40897
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| || || | | ||| || |||| || ||
Sbjct 40896 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACC 40837
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|| | ||| ||||||||||| || | || ||||| || || ||||||||||
Sbjct 40836 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTGA 40785
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| |||| || |||||| |||||||| || || |
Sbjct 41700 CCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAA 41641
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | ||||||||| || || || ||| | || |||| ||||| ||| ||
Sbjct 41640 AGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGA 41581
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | ||| ||| ||| | |||
Sbjct 41580 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACC 41521
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||||| ||||||||||| | || || || || ||||||||
Sbjct 41520 TCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422258083256372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |