Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq85 304 1e-77
seq154 125 7e-24
seq102 102 8e-17
seq43 87.8 2e-12
>seq85
Length=245923
Score = 304 bits (336), Expect = 1e-77
Identities = 546/791 (69%), Gaps = 15/791 (2%)
Strand=Plus/Minus
Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA-CAC 116706
||||| || ||||| || || |||||||||| ||| || || |||||||| || || | |
Sbjct 84986 TACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTGTCGAAAGATCTC 84927
Query 116707 GAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763
| ||||||| | | | | ||||| |||| || | ||| | ||||| || ||
Sbjct 84926 CA-CGACTGGCACCACAAGCTCAACGATGACGAACGTTACTTCGTTTCCCACGTCCTCGC 84868
Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823
|| ||||||||| |||||||||||||||||||| || |||||||| ||| | ||
Sbjct 84867 TTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCCGGCGA 84808
Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883
|| || || |||| || || ||||| || ||||| |||||| ||||| ||| | ||
Sbjct 84807 AGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAACATCCA 84748
Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGC 116939
| |||||||| || ||||| ||||| ||| | | || | || ||
Sbjct 84747 CAGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCCAAAGCAAAGACAATA 84688
Query 116940 TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999
| || | |||||||||| || || || ||| | | | |||| || || ||||| |
Sbjct 84687 CCTCTTCG----ACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGCTC 84632
Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059
| |||||||| | | ||||| || |||| | | |||| ||||| ||||| || || |
Sbjct 84631 TCCGCTGGATTTCAGATCGAGAGTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTG 84572
Query 117060 TCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCC 117119
| || || ||||||| || ||| |||||| |||| || ||||||||||| || || |
Sbjct 84571 TGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC 84512
Query 117120 TCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCG 117179
||||||||||||| || ||| |||||| || |||||| |||||||||| |||| ||
Sbjct 84511 TCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCG 84452
Query 117180 ACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGG 117239
||||||| || ||||| || ||| | || || || || | || ||
Sbjct 84451 ACTTTGCGTGCCTGCTGCTCTCGCACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGG 84392
Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC 117299
||| || ||| || ||| |||||||| ||||||||||| ||||| || ||
Sbjct 84391 CCATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTG 84332
Query 117300 GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358
||| ||||| | || | |||| | ||| ||| ||||| |||||||| |||||| ||
Sbjct 84331 CTCTACTGGGCATGAACT-CGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGG 84273
Query 117359 CTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418
||| || | ||| | | ||| ||||||| |||| ||| | |||||||||
Sbjct 84272 CTGTTGGTAAGTATGGGTAACCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATG 84213
Query 117419 AACCTCATCTC 117429
| ||||||
Sbjct 84212 GAGAACATCTC 84202
>seq154
Length=71981
Score = 125 bits (138), Expect = 7e-24
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||
Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | ||||| || |||| ||||| |||||||| || | |||
Sbjct 40847 AGTGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGAC 40906
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|||||||| || || | ||| || || ||||| || |||| |||||| | | |||||||
Sbjct 40907 CAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTAC 40966
Query 40867 AACATCCAGAAGGA 40880
||||| ||||| ||
Sbjct 40967 AACATTCAGAAAGA 40980
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||| ||||| ||||||||||| || |||| || ||| | |
Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | ||| ||||| | ||||| || || || || | |||||
Sbjct 41306 GATACCATCGATAACGTT-AAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| |||||||||||||| || | || ||| | || |||||
Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||| ||||| ||| | || ||||| || ||| || | ||| | || |||
Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGGC 41473
Score = 82.4 bits (90), Expect = 8e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| ||||| || || ||| | || || || | |
Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| || || | ||||| ||||| || || |||| |||
Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|||||||| |||| || || || || |||| |||| || || || || ||||||
Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|| ||||||||| || |||||
Sbjct 41654 ATTCAGAAGGAGAGTACACTGCA 41676
>seq102
Length=189570
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
|||||||| || || |||||||| ||||||||| | || ||||| || | |||| |
Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | | ||| ||||| ||||| | |||||||||||| |
Sbjct 7702 GACAATGTCAAGAGCAAGATCCAGGTCAAGGAGGGTATCCCGCCAGACCAGCAACGATTG 7761
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|| | |||||| || |||||||| || | || || ||| ||||||||||| || |||
Sbjct 7762 ATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAAAAG 7821
Query 40879 G 40879
|
Sbjct 7822 G 7822
>seq43
Length=153456
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| || || | || ||||| ||| | |||| ||| ||||| || || ||
Sbjct 109394 GACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTCGCCGGCAAGCAACTCGAG 109453
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| | |||||||| | |||||||||||||||||||||| | || || || || ||
Sbjct 109454 GATGGTCGCACCCTTAGCGACTACAACATCCAGAAGGAGTCGACTCTACACCTGGT 109509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217802467920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |