Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq85 304 1e-77 seq154 125 7e-24 seq102 102 8e-17 seq43 87.8 2e-12 >seq85 Length=245923 Score = 304 bits (336), Expect = 1e-77 Identities = 546/791 (69%), Gaps = 15/791 (2%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGA-CAC 116706 ||||| || ||||| || || |||||||||| ||| || || |||||||| || || | | Sbjct 84986 TACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTGTCGAAAGATCTC 84927 Query 116707 GAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||| | | | | ||||| |||| || | ||| | ||||| || || Sbjct 84926 CA-CGACTGGCACCACAAGCTCAACGATGACGAACGTTACTTCGTTTCCCACGTCCTCGC 84868 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 || ||||||||| |||||||||||||||||||| || |||||||| ||| | || Sbjct 84867 TTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCCGGCGA 84808 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 || || || |||| || || ||||| || ||||| |||||| ||||| ||| | || Sbjct 84807 AGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAACATCCA 84748 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTCGGAGGAGAAGC 116939 | |||||||| || ||||| ||||| ||| | | || | || || Sbjct 84747 CAGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCCAAAGCAAAGACAATA 84688 Query 116940 TCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGC 116999 | || | |||||||||| || || || ||| | | | |||| || || ||||| | Sbjct 84687 CCTCTTCG----ACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGCTC 84632 Query 117000 TGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCG 117059 | |||||||| | | ||||| || |||| | | |||| ||||| ||||| || || | Sbjct 84631 TCCGCTGGATTTCAGATCGAGAGTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTG 84572 Query 117060 TCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCC 117119 | || || ||||||| || ||| |||||| |||| || ||||||||||| || || | Sbjct 84571 TGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC 84512 Query 117120 TCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCG 117179 ||||||||||||| || ||| |||||| || |||||| |||||||||| |||| || Sbjct 84511 TCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCG 84452 Query 117180 ACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGG 117239 ||||||| || ||||| || ||| | || || || || | || || Sbjct 84451 ACTTTGCGTGCCTGCTGCTCTCGCACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGG 84392 Query 117240 AGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGC 117299 ||| || ||| || ||| |||||||| ||||||||||| ||||| || || Sbjct 84391 CCATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTG 84332 Query 117300 GTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358 ||| ||||| | || | |||| | ||| ||| ||||| |||||||| |||||| || Sbjct 84331 CTCTACTGGGCATGAACT-CGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGG 84273 Query 117359 CTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATG 117418 ||| || | ||| | | ||| ||||||| |||| ||| | ||||||||| Sbjct 84272 CTGTTGGTAAGTATGGGTAACCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATG 84213 Query 117419 AACCTCATCTC 117429 | |||||| Sbjct 84212 GAGAACATCTC 84202 >seq154 Length=71981 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || || || ||||| ||||||||| | || |||||| || Sbjct 40787 AAAATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAATCC 40846 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | ||||| || |||| ||||| |||||||| || | ||| Sbjct 40847 AGTGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCCTGAC 40906 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || || | ||| || || ||||| || |||| |||||| | | ||||||| Sbjct 40907 CAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGACTAC 40966 Query 40867 AACATCCAGAAGGA 40880 ||||| ||||| || Sbjct 40967 AACATTCAGAAAGA 40980 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| ||||||||||| || |||| || ||| | | Sbjct 41246 ATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATCT 41305 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| ||||| | ||||| || || || || | ||||| Sbjct 41306 GATACCATCGATAACGTT-AAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| |||||||||||||| || | || ||| | || ||||| Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||| ||| | || ||||| || ||| || | ||| | || ||| Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGGC 41473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| || || ||| | || || || | | Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || || | ||||| ||||| || || |||| ||| Sbjct 41534 GACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCAG 41593 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||||| |||| || || || || |||| |||| || || || || |||||| Sbjct 41594 CAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAAC 41653 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 || ||||||||| || ||||| Sbjct 41654 ATTCAGAAGGAGAGTACACTGCA 41676 >seq102 Length=189570 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 |||||||| || || |||||||| ||||||||| | || ||||| || | |||| | Sbjct 7642 TTCGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCAGACACAATC 7701 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | | ||| ||||| ||||| | |||||||||||| | Sbjct 7702 GACAATGTCAAGAGCAAGATCCAGGTCAAGGAGGGTATCCCGCCAGACCAGCAACGATTG 7761 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 || | |||||| || |||||||| || | || || ||| ||||||||||| || ||| Sbjct 7762 ATTTTCGCGGGAAAGCAGCTGGAAGATGGCCGAACTCTCTCTGACTACAACATTCAAAAG 7821 Query 40879 G 40879 | Sbjct 7822 G 7822 >seq43 Length=153456 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| || || | || ||||| ||| | |||| ||| ||||| || || || Sbjct 109394 GACAAGGAGGGTATTCCACCTGATCAGCAGCGATTGATCTTCGCCGGCAAGCAACTCGAG 109453 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | |||||||| | |||||||||||||||||||||| | || || || || || Sbjct 109454 GATGGTCGCACCCTTAGCGACTACAACATCCAGAAGGAGTCGACTCTACACCTGGT 109509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217802467920