Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq154 145 7e-30 seq43 91.5 1e-13 >seq154 Length=71981 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || || ||||| ||||||||||| ||||||| ||||| || || Sbjct 40999 CACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 40940 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | || ||||| ||||| || ||||| ||||||||||||||| Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| || |||||||| | ||| | || || Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||||||| || || || |||||||| Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || ||||||| ||| | ||| | |||||||||||| |||||||||||||| | Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| |||||||| || ||| |||| | |||||||| || || || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||||||| ||||| ||||| | |||| ||| || | || | || || Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGAT-TCCAC 41294 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| || | |||||||| || |||||||| |||||||| |||||| Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | |||| ||| || |||||||||||||| | ||| || ||||| Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| || || |||||||| || || || ||||||||||| Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | |||||| ||||| | ||| | || ||| Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || ||||| |||||| Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || |||||||| |||| ||| || || || || || || ||| Sbjct 41214 GTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCA 41155 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||| |||||||| |||||||| || |||||||| || ||||| || Sbjct 41154 GCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTG 41095 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| ||||||| || | || || || |||| || Sbjct 41094 ACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTC 41035 Query 118722 TTTACAAAAATCTGCATG 118739 || ||||||||||||||| Sbjct 41034 TTCACAAAAATCTGCATG 41017 >seq43 Length=153456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||||| | ||||| ||||||| Sbjct 109509 ACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCCTCG 109450 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 || || || || ||| |||| | ||||||||||| || || || ||||||||||||| Sbjct 109449 AGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTCTG 109392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829252654164