Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq154 145 7e-30
seq43 91.5 1e-13
>seq154
Length=71981
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||||| || || ||||| ||||||||||| ||||||| ||||| || ||
Sbjct 40999 CACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 40940
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| | || ||||| ||||| || ||||| |||||||||||||||
Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | |||| ||||| || |||||||| | ||| | || ||
Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||||||| || || || ||||||||
Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790
Score = 145 bits (160), Expect = 7e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| || || ||||||| ||| | ||| | |||||||||||| |||||||||||||| |
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| || || |||||| |||||||| || ||| |||| | |||||||| || || ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690
|| || ||||||||| ||||| ||||| | |||| ||| || | || | || ||
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGAT-TCCAC 41294
Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||| || | |||||||| || |||||||| |||||||| ||||||
Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | |||| ||| || |||||||||||||| | ||| || |||||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
| || ||||| || |||| || || |||||||| || || || |||||||||||
Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||| | |||||| ||||| | ||| | || |||
Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || ||||| ||||||
Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || || || |||||||| |||| ||| || || || || || || |||
Sbjct 41214 GTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCA 41155
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| ||||||| |||||||| |||||||| || |||||||| || ||||| ||
Sbjct 41154 GCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTG 41095
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || | ||| ||||||| || | || || || |||| ||
Sbjct 41094 ACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTC 41035
Query 118722 TTTACAAAAATCTGCATG 118739
|| |||||||||||||||
Sbjct 41034 TTCACAAAAATCTGCATG 41017
>seq43
Length=153456
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || |||||||| ||||| | ||||| |||||||
Sbjct 109509 ACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCCTCG 109450
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
|| || || || ||| |||| | ||||||||||| || || || |||||||||||||
Sbjct 109449 AGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTCTG 109392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433829252654164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |