Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq154 127 2e-24
seq43 98.7 8e-16
>seq154
Length=71981
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || |||||||||||||||||||| || || ||| |||| |||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| ||| |||||||| || |||| || || || || || || | |||||||||||||
Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | ||| ||||||| |||||| ||||||
Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || || |||||||| || |||||||||
Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || || |||||||||||||||||| ||| |||| |||| ||
Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCA 40939
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| || || ||||| ||||| | ||||||||||| |
Sbjct 40938 AGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGA 40879
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | || ||||| | ||| || ||||||
Sbjct 40878 ATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
|| ||||||||||| || ||||| ||||| |||
Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCATTTTG 40786
Score = 109 bits (120), Expect = 4e-19
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||||| |||||| | || | |||||| || ||| |||||||||||||| ||
Sbjct 41473 GCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGA 41414
Query 45169 CA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226
|| ||| ||| | || ||||| ||||| || ||||| ||||||||||| ||||| ||
Sbjct 41413 CAAGGTT--CGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGT 41356
Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286
|| | ||| |||||||| ||||| |||||| | | | | || |||
Sbjct 41355 GGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCC 41296
Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || | || || || ||||| || ||||| || ||||| |||||||||
Sbjct 41295 ACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
|||||||| || ||||| || ||| ||| || |||| |||||||| || || || |
Sbjct 41208 TCCTTCTGGATATTGTAATCACTCAAAGTT--CGGCCGTCTTCCAGTTGCTTACCAGCAA 41151
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| || | ||||| ||||||||||| | ||||||||| ||| ||||| ||| ||
Sbjct 41150 AGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTGACAT 41091
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | | || | ||| ||||| | || || ||||| || |||| |||||||
Sbjct 41090 TGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCA 41031
Query 45324 CAAAGATTTGCATG 45337
|||| || ||||||
Sbjct 41030 CAAAAATCTGCATG 41017
>seq43
Length=153456
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
|| |||| | || || ||||| ||| || || ||||||||| |||||||||||| |
Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| |||| | || || ||||| || |||||||| ||||| ||||| || || || ||
Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408
Query 45230 ACACCCTCCTTGTC 45243
| ||||||||||||
Sbjct 109407 ATACCCTCCTTGTC 109394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395074155149557
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |