Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq154 127 2e-24 seq43 98.7 8e-16 >seq154 Length=71981 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||||||||||||||||| || || ||| |||| ||| Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| |||||||| || |||| || || || || || || | ||||||||||||| Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||| ||||||| |||||| |||||| Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || |||||||| || ||||||||| Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || || |||||||||||||||||| ||| |||| |||| || Sbjct 40998 ACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCA 40939 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| || || ||||| ||||| | ||||||||||| | Sbjct 40938 AGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGA 40879 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | || ||||| | ||| || |||||| Sbjct 40878 ATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTG 40819 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||||||||| || ||||| ||||| ||| Sbjct 40818 CCAGTCAGAGTCTTGACGAAGATCTGCATTTTG 40786 Score = 109 bits (120), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||||| |||||| | || | |||||| || ||| |||||||||||||| || Sbjct 41473 GCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGA 41414 Query 45169 CA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || ||| ||| | || ||||| ||||| || ||||| ||||||||||| ||||| || Sbjct 41413 CAAGGTT--CGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGT 41356 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||| |||||||| ||||| |||||| | | | | || ||| Sbjct 41355 GGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCC 41296 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || | || || || ||||| || ||||| || ||||| ||||||||| Sbjct 41295 ACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCA--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||||||| || ||||| || ||| ||| || |||| |||||||| || || || | Sbjct 41208 TCCTTCTGGATATTGTAATCACTCAAAGTT--CGGCCGTCTTCCAGTTGCTTACCAGCAA 41151 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | || | ||||| ||||||||||| | ||||||||| ||| ||||| ||| || Sbjct 41150 AGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTGACAT 41091 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | || | ||| ||||| | || || ||||| || |||| ||||||| Sbjct 41090 TGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCA 41031 Query 45324 CAAAGATTTGCATG 45337 |||| || |||||| Sbjct 41030 CAAAAATCTGCATG 41017 >seq43 Length=153456 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| | || || ||||| ||| || || ||||||||| |||||||||||| | Sbjct 109527 CCGCCTCGAAGTCGTAGTACCAGGTGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTA 109468 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || ||||| || |||||||| ||||| ||||| || || || || Sbjct 109467 AGGGTGCGACCATCCTCGAGTTGCTTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGA 109408 Query 45230 ACACCCTCCTTGTC 45243 | |||||||||||| Sbjct 109407 ATACCCTCCTTGTC 109394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074155149557