Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq154 86.0 5e-12
>seq154
Length=71981
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || ||||||||||| ||||||||||||||| || || || |||
Sbjct 41001 AGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCT 40942
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|| | || || || || | || || | ||| || || || | ||| ||||| ||
Sbjct 40941 TCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 40882
Query 18234 GCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| ||| | |||||| | | | ||||||| || ||| |||| ||||||| |
Sbjct 40881 TGAATCTTGCT-CTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGT 40823
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| |||| || || || || || ||||||||
Sbjct 40822 CTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTT 40787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379342996753665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |