Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq123 354 7e-93 seq85 230 2e-55 seq154 122 8e-23 >seq123 Length=109856 Score = 354 bits (392), Expect = 7e-93 Identities = 1200/1853 (65%), Gaps = 38/1853 (2%) Strand=Plus/Minus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| |||||||| |||||||| ||||| |||||||| ||||| | || || || | Sbjct 49177 TGGTTCGAAGATAGTACATGCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAG 49118 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | || | || | | || |||||||| |||||| | Sbjct 49117 AAGTGATCTTGCCCATGGTTGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAA 49058 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 | || || |||||||| |||||||| | || | || | | || || ||||| || | Sbjct 49057 TGAAGGCACCTCGATCAGCGGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAG 48998 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTA 22381 ||||||| ||| |||| || || || | || | | | ||| | || ||| Sbjct 48997 TCTTGTAGAGTGCTTTGATGTCGGTTGGAAT-GTTTGGTACGTTCTGAATTGAACCGCCC 48939 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAA----ATC 22437 | | ||||| || || || | || ||||| || | | |||| ||| Sbjct 48938 TCGGCAATGATTCTGTTCTTCATGTTGTCCGACCACAGGCCAA----GATCAACGAGATC 48883 Query 22438 TTTGACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAA 22495 ||||| ||| ||| | || || || ||||| ||||| | || || || || ||| Sbjct 48882 TTTGAGCAGCCATG--GATTGACGACCTGAAATTCGCCTGCTAACACACGACGGGAGTAG 48825 Query 22496 ATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCG 22555 ||||||||||| | || ||||| ||||||| || |||| |||||| | || || ||| Sbjct 48824 ATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGACGTAGAGGCG 48765 Query 22556 GTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTG 22615 |||||||| || || | || || || |||| | || | || | ||| || || Sbjct 48764 GTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAATCTTGGCTTTC 48705 Query 22616 A--GCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA 22673 | || || ||||||||| || || | || |||| | |||| | ||||| || | Sbjct 48704 AAGGCCTC--CCAGTCCCAAAGGTCTGTTGGTGTCAGAC---CCCAGAGGTCGTACTGTA 48650 Query 22674 ACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAA 22733 | || || || ||| || || |||||||| |||||| | | |||| Sbjct 48649 GCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCTTCGCAA 48590 Query 22734 GTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATT 22793 | || || || || || ||| || ||||||||||| |||| |||| | | Sbjct 48589 GGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTGAGCT 48530 Query 22794 CGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCT 22853 || || ||| |||||| | | | ||| || || || | || | Sbjct 48529 GTCTTGCTTCGGGAGAATCGAACGGCAGTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTT 48470 Query 22854 GAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGAT 22913 |||| || | ||| || ||||||| | | | || | | | || || || | || | Sbjct 48469 GAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCGGGACGGGGT 48410 Query 22914 ACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNN 22973 | | || ||||| | |||||| ||| | |||| | | | | Sbjct 48409 AGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTCGTGCA 48350 Query 22974 NNNNNTCAAAGTCGTAAACGCC--CGA-TTGTACAAC-AAACTTGTTGACGGCGATCGAG 23029 ||||||| || || ||| ||| |||| ||| || | | | | || Sbjct 48349 GTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACGAAAGATGGCAAAG-CAACAGAA 48291 Query 23030 GCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGA 23089 || | |||||| ||||| |||||||| || |||||||| | ||||| || || | Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||| |||| || |||||||| || |||| || ||||||| ||||| | |||||| Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 ||||||||| | || | || ||||| ||| | ||| | ||| || ||||| || Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTC 48111 Query 23210 TGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | | ||| || | | |||||| | ||| ||||| | | ||| || || Sbjct 48110 TGTGCCTTGATT-GTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTC 48052 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 || || ||||||| ||||| | | || || | || | || || | |||| |||| Sbjct 48051 GAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCA 47992 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 | || || ||||| || |||| || ||||| || |||| |||||||| |||| Sbjct 47991 GTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAA 47932 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || || || || || || || || ||| |||||| | | || | || || || Sbjct 47931 ATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGAC 47872 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 || || ||||| ||||| |||||||||||||| || || |||||||| ||||||||||| Sbjct 47871 ATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTG 47812 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 |||||||| || || || |||| | |||| ||||| || || || ||||| || | Sbjct 47811 GTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGT 47752 Query 23569 GCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTAT 23628 |||| | ||| || | | || || | ||||||| ||||| |||| || || || Sbjct 47751 GCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAAT 47692 Query 23629 GCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688 || ||| | || || ||||| ||||| || || || |||||||| |||||||| Sbjct 47691 ACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGAT 47632 Query 23689 GCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGC 23748 |||||| || | ||| ||||||||| || |||||||| || || || || | || Sbjct 47631 CGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGC 47572 Query 23749 CGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC---GACATTAGATTGTACGT 23805 ||| || || || ||||| || || ||| ||| ||||| |||||||| || Sbjct 47571 ATTGAAGAGGGTGGGCGAAGCGTGTGTGAA-CATC--TTCTGGGACATGAGATTGTATGT 47515 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || ||| | || || || ||||| || || || | | |||||||||| ||||| Sbjct 47514 CTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATCAGCATGTG 47455 Query 23866 TTGAGGTCTCTCGACCGTGACGCC--GTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 || ||||| || || || | | || | ||||| |||||||| | || || || Sbjct 47454 CTGTGGTCTTTC--CCATGGCTTCTTGTCATATTTGAGAAGATATGATCTTTCCAGTGTC 47397 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || |||||||||| |||||||| || || |||| || ||||| || || Sbjct 47396 TTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGGCAGAGTT 47344 >seq85 Length=245923 Score = 230 bits (254), Expect = 2e-55 Identities = 562/842 (67%), Gaps = 15/842 (2%) Strand=Plus/Minus Query 57582 TACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTG 57641 ||||| || || ||||| || || ||||||| ||||||||| |||||||| || ||||| Sbjct 84986 TACAAGAAAGCCGAAGCCTCCTTCTGGACCGCCGAAGAAGTCGACCTGTCGAAAGATCTC 84927 Query 57642 AGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCG 57698 ||| ||| | | ||||| || || | | || || ||||| | || Sbjct 84926 CACGACTGGCACCACAAGCTCAACGATGACGAACGTTACTTCGTTTCCCACGTCCTCGCT 84867 Query 57699 TTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAA 57758 || |||||||| || || || || || |||||||| | ||||| | || || ||| Sbjct 84866 TTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCCGGCGAA 84807 Query 57759 GTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCAT 57818 || ||||| | || || | |||||||| || || || | || |||||| | || Sbjct 84806 GTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAACATCCAC 84747 Query 57819 TCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTA 57876 |||||||| || || ||||| || || ||| | || || ||| | ||| | || Sbjct 84746 AGCGAAATGTACTCACTTCTCATTGACACATACATTAAAGAGCCAAAGCAAAGACAA-TA 84688 Query 57877 GACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCA 57936 || ||| |||| ||||| ||||| || || ||||| || || ||| | || Sbjct 84687 C-CTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGGGCTCTCC 84629 Query 57937 AATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 ||||| | | || | | |||| || ||| || | || |||| || ||||| || Sbjct 84628 GCTGGATTTCAGATCGAGA-GTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTG 84570 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 |||||||| ||||| || ||| ||| || | || || ||| | ||||| || || || Sbjct 84569 GAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTC 84510 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGAT 58115 ||||||||||| || || |||||| | || || || |||||||| | || || || Sbjct 84509 ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGCACACCGAC 84450 Query 58116 TTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGAC 58175 ||||||||||| || ||| ||| || | | || | ||| | ||| || | Sbjct 84449 TTTGCGTGCCTGCTGCTCTCGCACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGGCC 84390 Query 58176 ATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCC 58235 || ||| |||||| ||| |||||| | || || ||||||| || || || || || Sbjct 84389 ATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCT 84330 Query 58236 ATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT 58295 | || || |||||| | | ||| ||||||||||||| ||||||||| | || Sbjct 84329 CTACTGGGCATGAACTCGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTG 84270 Query 58296 TTGCTCGAACTGATTGGAGAGCGTCATTACAACACG---AAAAATCCGTTTGATTTTATG 58352 ||| | || | || || | | | ||| ||| | | ||||||||||| |||||| Sbjct 84269 TTGGT--AAGT-ATGGGTAACCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATG 84213 Query 58353 AATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCaa 58412 | ||||| || | ||||||||| || || ||||| || ||| | || || ||| Sbjct 84212 GAGAACATCTCTCTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAA 84153 Query 58413 aa 58414 || Sbjct 84152 AA 84151 >seq154 Length=71981 Score = 122 bits (134), Expect = 8e-23 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 |||||| ||||| || ||||| ||||||||||| ||||| || |||||| | || || || Sbjct 40784 ATCAAA-ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGA 40842 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 | | |||| |||| | ||||| | || |||||||| ||| | || || Sbjct 40843 ATCCAGTGACACGATCGACAATGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCTCC 40902 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGA 31365 |||||||| ||||| || |||||||| || ||| | |||||| | || ||||||| Sbjct 40903 TGACCAGCAACGTCTGATTTTCGCTGGTAAGCAGCTTGAAGACGGTCGCACCTTGAGCGA 40962 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || |||||||| |||||||| || || || |||| || Sbjct 40963 CTACAACATTCAGAAAGAATCAACCCTCCACTTGGTGCT 41001 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| |||| || || || ||||| |||| ||||| | || Sbjct 41017 CATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTC 41076 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | ||| ||| ||||| || | || |||||||| Sbjct 41077 CGATACCATCGACAATGTCAAGAGCAAAATCCAGGATAAGGAGGGTATTCCTCCCGACCA 41136 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || || |||||||| ||| |||| ||||| || Sbjct 41137 GCAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACAA 41196 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || |||||||||||||| || || || |||| Sbjct 41197 TATCCAGAAGGAATCGACTCTTCACCTAGTTCTACGACT 41235 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || ||||| ||||||||||| || || |||| || ||| | || Sbjct 41245 CATGCAAATTTTTGTCAAAACTCTCACAGGCAAAACCATAACACTCGAAGTGGAATCATC 41304 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || ||| ||||||||||| | || || ||||| Sbjct 41305 TGATACCATCGATAACGTTAAGTCGAAAATCCAAGACAAGGAAGGTATTCCACCAGACCA 41364 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||||||| |||| || | || || ||||| || Sbjct 41365 GCAGCGGTTGATCTTCGCAGGCAAACAGCTGGAGGATGGTCGAACCTTGTCAGATTACAA 41424 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| ||||| || || || || || || || ||| || | || || Sbjct 41425 CATTCAGAAAGAGTCTACACTGCACCTTGTGCTGAGATTGCGAGGTGG 41472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| || || ||||| || || ||| | || ||||| || Sbjct 41473 CATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTC 41532 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || | || ||||||||| || | ||||| || || Sbjct 41533 TGACACTATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATCA 41592 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || || || || || || || || ||||| ||| | ||| | ||||| || Sbjct 41593 GCAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACAA 41652 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||| || || || || || |||| || |||| ||||||| Sbjct 41653 CATTCAGAAGGAGAGTACACTGCACTTGGTTCTCCGACTTCGGGGCGG 41700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765190858640