Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq123 194 2e-44 >seq123 Length=109856 Score = 194 bits (214), Expect = 2e-44 Identities = 851/1326 (64%), Gaps = 32/1326 (2%) Strand=Plus/Minus Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAAT 62833 ||||||||||||| ||| || |||| ||||| || | |||| ||||| || | Sbjct 48473 CCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTCTTTCTCGCTTCCGGGAC 48415 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893 || || || || || || || || || || || || | || || | || || || Sbjct 48414 GGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTC 48355 Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------AC-AAACATGTTCAATGCAA 62946 | |||| | ||| ||| || | || || | | || ||| ||| ||| |||| Sbjct 48354 GTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACGAAAGATGG-CAAAGCAA 48296 Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006 |||| |||| ||| || ||||| ||||| | || | | || | || || || |||| Sbjct 48295 CAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGC 48236 Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066 | | || ||||||| || || || || | |||||||| ||| |||| || || | Sbjct 48235 ACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGT 48176 Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126 |||| || || |||||||| | ||||| ||| |||| | || | || || | ||| | Sbjct 48175 CCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACA 48116 Query 63127 -CGACTCGAGCCTTTATTATAGATTTGTATCT-CCTT---TCTCTTTCGTATAGAGTATA 63181 | || | ||||| ||| | | | || |||| |||| | | | | || | Sbjct 48115 ACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA----A 48061 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATT--GTCCAATCTAGGACATTCATCCGGACAC 63239 || |||||||| || || | || | | || || ||| ||| | || || Sbjct 48060 CAGAGCCTCGAACTCCTCACCGTAG-CAGTCAGATAAACCT-GGAGCTTCGTTGGGGCAG 48003 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299 | | | ||| ||||||| | || || || ||||| || ||||| ||| |||| ||| Sbjct 48002 AAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGA 47943 Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 || ||| | ||| | | | | ||| || ||||| ||||| || | || Sbjct 47942 GCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGC 47883 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | ||| | ||||| || || | ||| | ||| | | ||||| | ||| Sbjct 47882 CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG 47823 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||||| ||| || || | | | |||| | ||| || | || Sbjct 47822 TTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGG 47763 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||||||| | || || || || | ||||||| ||| | || ||||| || | Sbjct 47762 CCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACG 47703 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | || || || || || | || ||||| | ||||| |||| ||| || ||| Sbjct 47702 TTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAG 47643 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || || || || |||||| | | ||||| |||||||| | Sbjct 47642 ATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTT 47583 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || ||||| || | ||| || |||||||| || ||| || | || | ||| Sbjct 47582 GGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGA 47523 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| |||||||| | || ||||| | |||||| || || | || ||||| Sbjct 47522 TTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATC 47463 Query 63780 AACATGTGCTGAGGTCTTTCAACAATT--TTGTTGTTTATTTTCAACAAG-TAGGATTTT 63836 | ||||||||| |||||||| | || || |||| || || | ||| || ||| || Sbjct 47462 AGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATATTTGAGAAGATATGATCTT 47406 Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896 |||| || || || |||||||||||||| ||| ||||| ||||| | ||| | || Sbjct 47405 TCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGGCAGAG 47346 Query 63897 TTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGA 63955 ||||||| || | | | || | | ||| | ||| || || ||||| || Sbjct 47345 TTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTCCTTGGAGATCATCGGCGA 47287 Query 63956 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 || | ||||| || ||||| ||||||||| | | || || ||| | || | Sbjct 47286 GTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGTGATGACTGCCGAGAACTG 47227 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || || || | |||||| ||||| || | || || | ||| || || ||||| ||||| Sbjct 47226 CTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGCAGCGAGGATGGCGTAATC 47167 Query 64076 CGGATG 64081 ||||| Sbjct 47166 TGGATG 47161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629815891619760