Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq123 194 2e-44
>seq123
Length=109856
Score = 194 bits (214), Expect = 2e-44
Identities = 851/1326 (64%), Gaps = 32/1326 (2%)
Strand=Plus/Minus
Query 62775 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAAT 62833
||||||||||||| ||| || |||| ||||| || | |||| ||||| || |
Sbjct 48473 CCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTCTTTCTCGCTTCCGGGAC 48415
Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62893
|| || || || || || || || || || || || | || || | || || ||
Sbjct 48414 GGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGACCTC 48355
Query 62894 CTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------AC-AAACATGTTCAATGCAA 62946
| |||| | ||| ||| || | || || | | || ||| ||| ||| ||||
Sbjct 48354 GTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACGAAAGATGG-CAAAGCAA 48296
Query 62947 CAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGC 63006
|||| |||| ||| || ||||| ||||| | || | | || | || || || ||||
Sbjct 48295 CAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGC 48236
Query 63007 AAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCAT 63066
| | || ||||||| || || || || | |||||||| ||| |||| || || |
Sbjct 48235 ACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGT 48176
Query 63067 CCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA 63126
|||| || || |||||||| | ||||| ||| |||| | || | || || | ||| |
Sbjct 48175 CCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACA 48116
Query 63127 -CGACTCGAGCCTTTATTATAGATTTGTATCT-CCTT---TCTCTTTCGTATAGAGTATA 63181
| || | ||||| ||| | | | || |||| |||| | | | | || |
Sbjct 48115 ACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGA----A 48061
Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATT--GTCCAATCTAGGACATTCATCCGGACAC 63239
|| |||||||| || || | || | | || || ||| ||| | || ||
Sbjct 48060 CAGAGCCTCGAACTCCTCACCGTAG-CAGTCAGATAAACCT-GGAGCTTCGTTGGGGCAG 48003
Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299
| | | ||| ||||||| | || || || ||||| || ||||| ||| |||| |||
Sbjct 48002 AAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGA 47943
Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359
|| ||| | ||| | | | | ||| || ||||| ||||| || | ||
Sbjct 47942 GCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGC 47883
Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419
|| | | | ||| | ||||| || || | ||| | ||| | | ||||| | |||
Sbjct 47882 CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTG 47823
Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479
|| || ||||| || | ||||| ||| || || | | | |||| | ||| || | ||
Sbjct 47822 TTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGG 47763
Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539
||||||||| | || || || || | ||||||| ||| | || ||||| || |
Sbjct 47762 CCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACG 47703
Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599
| || || || || || | || ||||| | ||||| |||| ||| || |||
Sbjct 47702 TTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAG 47643
Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659
|| || || || || || |||||| | | ||||| |||||||| |
Sbjct 47642 ATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTT 47583
Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719
| || || ||||| || | ||| || |||||||| || ||| || | || | |||
Sbjct 47582 GGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGA 47523
Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779
||||| |||||||| | || ||||| | |||||| || || | || |||||
Sbjct 47522 TTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGCATC 47463
Query 63780 AACATGTGCTGAGGTCTTTCAACAATT--TTGTTGTTTATTTTCAACAAG-TAGGATTTT 63836
| ||||||||| |||||||| | || || |||| || || | ||| || ||| ||
Sbjct 47462 AGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATATTTGAGAAGATATGATCTT 47406
Query 63837 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAA 63896
|||| || || || |||||||||||||| ||| ||||| ||||| | ||| | ||
Sbjct 47405 TCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTATACAATGGCAGAG 47346
Query 63897 TTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGA 63955
||||||| || | | | || | | ||| | ||| || || ||||| ||
Sbjct 47345 TTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTCCTTGGAGATCATCGGCGA 47287
Query 63956 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015
|| | ||||| || ||||| ||||||||| | | || || ||| | || |
Sbjct 47286 GTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGTGATGACTGCCGAGAACTG 47227
Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075
|| || || | |||||| ||||| || | || || | ||| || || ||||| |||||
Sbjct 47226 CTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGCAGCGAGGATGGCGTAATC 47167
Query 64076 CGGATG 64081
|||||
Sbjct 47166 TGGATG 47161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629815891619760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |