Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq123 123 2e-23 >seq123 Length=109856 Score = 123 bits (136), Expect = 2e-23 Identities = 430/671 (64%), Gaps = 0/671 (0%) Strand=Plus/Minus Query 37964 ATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTT 38023 |||| |||||| |||| || || | |||| ||| ||| | | ||| || || || | Sbjct 48028 ATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCT 47969 Query 38024 CCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGT 38083 ||| || | ||| || ||| | || ||| ||||| | | | |||||| | Sbjct 47968 TCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCT 47909 Query 38084 TCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143 | || ||||| | | | | || | || || | ||| |||||||| || || | | Sbjct 47908 TTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGT 47849 Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203 ||| | | || || ||||| || | || ||||| | | |||| | | || || | Sbjct 47848 AAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGT 47789 Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263 | | | || | |||||| || | || || ||| |||||||| | || | ||||| | Sbjct 47788 CAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGG 47729 Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323 || | ||||| || || | |||||| || || || |||| ||||| || | Sbjct 47728 AGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCA 47669 Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383 ||||| |||| |||||| | || || || || ||| ||||| || | | Sbjct 47668 TGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCA 47609 Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 ||||| |||||||||| ||| || || || || || | || || || || | Sbjct 47608 AGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGT 47549 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 || ||||| || | |||| ||| ||||| || || || | || ||||| | | Sbjct 47548 GTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTC 47489 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563 | ||||| || | ||| || | ||| ||||| || ||||||||||| | || || | Sbjct 47488 CATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTTGT 47429 Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAAT 38623 | ||| || ||||| ||| |||| | ||| || | |||||||| | || | ||| Sbjct 47428 CATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAAT 47369 Query 38624 CTCTATCGTAT 38634 ||| |||||| Sbjct 47368 CTCGGTCGTAT 47358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523529126480