Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq123 123 2e-23
>seq123
Length=109856
Score = 123 bits (136), Expect = 2e-23
Identities = 430/671 (64%), Gaps = 0/671 (0%)
Strand=Plus/Minus
Query 37964 ATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTT 38023
|||| |||||| |||| || || | |||| ||| ||| | | ||| || || || |
Sbjct 48028 ATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCT 47969
Query 38024 CCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGT 38083
||| || | ||| || ||| | || ||| ||||| | | | |||||| |
Sbjct 47968 TCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCT 47909
Query 38084 TCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATAT 38143
| || ||||| | | | | || | || || | ||| |||||||| || || | |
Sbjct 47908 TTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGT 47849
Query 38144 AAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTAT 38203
||| | | || || ||||| || | || ||||| | | |||| | | || || |
Sbjct 47848 AAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGT 47789
Query 38204 TATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAG 38263
| | | || | |||||| || | || || ||| |||||||| | || | ||||| |
Sbjct 47788 CAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGG 47729
Query 38264 TACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323
|| | ||||| || || | |||||| || || || |||| ||||| || |
Sbjct 47728 AGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCA 47669
Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383
||||| |||| |||||| | || || || || ||| ||||| || | |
Sbjct 47668 TGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCA 47609
Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443
||||| |||||||||| ||| || || || || || | || || || || |
Sbjct 47608 AGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGT 47549
Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503
|| ||||| || | |||| ||| ||||| || || || | || ||||| | |
Sbjct 47548 GTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTC 47489
Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTAT 38563
| ||||| || | ||| || | ||| ||||| || ||||||||||| | || || |
Sbjct 47488 CATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTCCCATGGCTTCTTGT 47429
Query 38564 TCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAAT 38623
| ||| || ||||| ||| |||| | ||| || | |||||||| | || | |||
Sbjct 47428 CATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAAT 47369
Query 38624 CTCTATCGTAT 38634
||| ||||||
Sbjct 47368 CTCGGTCGTAT 47358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468523529126480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |