Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq123 217 2e-51 >seq123 Length=109856 Score = 217 bits (240), Expect = 2e-51 Identities = 1301/2064 (63%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || || || || || | | || || ||||||||||| || || || ||| Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| || || |||||| || | ||| | || || | | Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || |||| || || ||||| |||||||| || | || || ||||| | ||| Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || || | || | || ||||| | ||| || || | | || || || ||||| | Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966 Query 65079 TTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 |||| || |||||||| || || || || || || || || ||||| || | || | Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || | || | | || | || || ||||| || || |||||||| || Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 | || || | || | ||| || || ||||| || || | | |||||||| ||| Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 || || || | || || || |||||||| ||||| || | | | ||||| || ||| Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726 Query 65316 TA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 65374 || || | || || |||| | | ||||| | |||||| || | ||| | Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667 Query 65375 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 65434 ||||| ||| | | | ||| || |||| || |||||||| Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607 Query 65435 TCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 65491 || ||||||| || || ||||| || | || ||| || || || || Sbjct 48606 ACCAAGTTCCTTCGCA---AGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550 Query 65492 GAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG-AA 65550 ||| || | | || || | | |||||| | ||| || || | | |||| | || Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491 Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610 || || || || | ||||||||||||| ||| || |||| ||||| || | Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTC 48432 Query 65611 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 65669 |||| ||||| || | || || || || || || || || || || || || | Sbjct 48431 TTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTC 48372 Query 65670 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT------AC- 65722 || || | || || || | |||| | ||| ||| || | | || | | || Sbjct 48371 ATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACG 48312 Query 65723 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 65782 ||| ||| ||| |||||||| |||| ||| || ||||| ||||| | || | | || Sbjct 48311 AAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTA 48253 Query 65783 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 65842 | || || || ||||| | || |||||||||| || || || | |||||||| Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193 Query 65843 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 65902 ||| |||| || || ||||| || || |||||||| | ||||| ||| |||| | || Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133 Query 65903 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT--CTT--TTCT 65957 | || || | ||| | | || | ||||| ||| | | | || ||| |||| Sbjct 48132 CAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCT 48074 Query 65958 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT---CCA 66014 | | | | | | ||| |||||||| || || | || ||| || || Sbjct 48073 CATACTTCTCGA----ACAGAGCCTCGAACTCCTCACCGTAG-CA--GTCAGATAAACCT 48021 Query 66015 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 66074 ||| ||| | || || | | | ||| ||||||| | || || || ||||| || Sbjct 48020 GGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAAC 47961 Query 66075 AGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 66134 ||||| ||| |||| ||||| ||| ||||| | | | | ||| || ||||| Sbjct 47960 AGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGG 47901 Query 66135 TTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCC 66194 ||||| || | || || | | | ||| ||||| || || | ||| | ||| Sbjct 47900 TTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841 Query 66195 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 66254 | | ||||| | ||||| || ||||| || | ||||| ||| || || | | | ||| Sbjct 47840 AAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACT 47781 Query 66255 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTT 66314 | | ||| || | || || || ||||| || || || || | ||||||| ||| | Sbjct 47780 CGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTC 47721 Query 66315 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 66374 || ||||| || | | || || || || || | || ||||| | ||||| Sbjct 47720 GCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAG 47661 Query 66375 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 66434 |||| |||||| ||||| ||||| || || ||| |||||| | | ||||| Sbjct 47660 GTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACAT 47601 Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 |||||||| | || || ||||| || | ||| || |||||||| || ||| Sbjct 47600 GATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAAC 47541 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || | || | |||||||| |||||||| | || ||||| | |||||| Sbjct 47540 ATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATG 47481 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--CTTGTTGTTTATTT 66612 || || | || ||||| | ||||||||| |||||||| | || ||| |||| || | Sbjct 47480 CCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATAT 47424 Query 66613 TCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 66671 | | ||| || ||| |||||| || || || |||||||||||||| ||| ||||| Sbjct 47423 TTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGG 47364 Query 66672 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 66731 ||||| | ||| | |||||||| | || | | | || ||| ||| | Sbjct 47363 TCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTC 47305 Query 66732 CTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 66790 ||| || || ||||| || || | ||||| || ||||||||||||||| | | || Sbjct 47304 CTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGT 47245 Query 66791 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 66850 || ||| | || | || || || | ||||| ||||| || || || || | || Sbjct 47244 GATGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGC 47185 Query 66851 GGCTATAATGGCATAATCCGGATG 66874 || | ||||| ||||| ||||| Sbjct 47184 AGCGAGGATGGCGTAATCTGGATG 47161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171014706280