Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq154 127 2e-24 seq85 118 1e-21 >seq154 Length=71981 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || ||||| | || || ||||| |||||||| || ||||| Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| |||||| ||||| |||||||| | |||||||||||||| || ||||| Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || ||||| ||| | || | || | | || | ||||| ||| || | Sbjct 40897 AATGCCCTCCTTGTC-TTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGA 40839 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | |||||||| |||| || || ||||| || ||||| Sbjct 40838 CCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 |||||||| || | || | ||| ||||| | ||| ||| || |||||||| ||||| Sbjct 41703 TGGCCGCCCCGAAGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCA 41644 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||| || | || || || ||| ||||||| ||||||||||| || Sbjct 41643 GAAAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGC 41584 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || ||||| ||| || |||| | || | ||||| | | ||| Sbjct 41583 GGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCA 41524 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||||| | || || ||||| |||||||| Sbjct 41523 ACCTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474 >seq85 Length=245923 Score = 118 bits (130), Expect = 1e-21 Identities = 310/469 (66%), Gaps = 7/469 (1%) Strand=Plus/Minus Query 52607 CCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTA 52666 |||| |||||| | ||||||||||| ||||| ||||||||| | || || || || Sbjct 84607 CCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCT 84548 Query 52667 GTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGC 52725 || || | || || | |||| || | || | | ||||||||||| || || | Sbjct 84547 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTTACCTTCTCC 84489 Query 52726 AACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAA 52784 ||||| | || || || ||||| || |||||||| || |||||||| || | | | Sbjct 84488 AACGAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCT-- 84431 Query 52785 TACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGT 52844 ||| | |||| | ||| | ||| || | | ||| | |||||||| Sbjct 84430 --CGCACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGT 84373 Query 52845 CGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAACGC 52904 | | || || |||| || | || || || | ||||| | | ||||||||||| | Sbjct 84372 CCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTC 84313 Query 52905 GACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCA 52964 || | ||| ||||||| ||||| ||||| ||| | |||||| | | ||| | Sbjct 84312 GAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTAA 84253 Query 52965 GCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGG 53024 ||||| ||||| || | || || ||| |||||| | ||||| || || | ||| Sbjct 84252 CCCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGG 84193 Query 53025 CAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAATGTTTGGT 53073 ||| || || || ||||||| || ||||| || ||| ||| | |||| Sbjct 84192 CAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAAAAGGCTGGT 84144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062654426400