Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq123 253 3e-62 seq85 134 2e-26 >seq123 Length=109856 Score = 253 bits (280), Expect = 3e-62 Identities = 1308/2059 (64%), Gaps = 37/2059 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || || || || || | | || || ||||||||||| || || || ||| Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||| |||||| || | ||| | || || | | Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || |||| || || ||||| |||||||| || | || || ||||| | ||| Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || | || | || ||||| | ||| || || | | || || || ||||| | Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966 Query 78958 TTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 |||| || |||||||| || || || || || || || || ||||| || | || | Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | || | | || | || || ||||| || || |||||||| || Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | || || | || | ||| || || |||||||| || | |||||||||| ||| Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 || || || | || || || || ||||| ||||| || | | | ||||| || ||| Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726 Query 79195 TA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 || ||| | || || |||| | | ||||| |||||||| || | || | | Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| || || || ||||| ||| | | | | || || || ||||| || || Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607 Query 79314 TCC---TTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTC 79370 || |||||| || | ||||| || | ||| ||| || || || || Sbjct 48606 ACCAAGTTCCTTC---GCAAGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550 Query 79371 GAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AA 79429 ||| || | | ||||| | | |||||| | ||| || || | | |||| | || Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 || || || || | ||||||||||||| ||| || |||| ||||| || | Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTC 48432 Query 79490 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACT 79548 |||| ||||| || | || || || || || || || || || || || ||| | Sbjct 48431 TTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTC 48372 Query 79549 ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT------AC- 79601 || || | || || || | ||| | ||| ||| || | || || | | || Sbjct 48371 ATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACG 48312 Query 79602 AAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 79661 ||| ||| ||| || ||||| |||| ||| || ||||| ||||| | || | | || Sbjct 48311 AAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTA 48253 Query 79662 TTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACT 79721 | || ||||| ||||| | ||| |||| ||||| || || || | |||||||| Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193 Query 79722 CTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTC 79781 ||| |||| || || ||||| || || ||||| || | ||||| ||| |||| | || Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133 Query 79782 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTT 79840 | || || | ||| | | || | ||||| ||| | | || ||| | | Sbjct 48132 CAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCT 48074 Query 79841 CGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 | || || | | | | | | |||||||| || || | || ||| || ||| Sbjct 48073 CATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGC 48016 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 ||||| || || | | | ||| ||||| | | || || || ||||| || ||||| Sbjct 48015 TTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATC 47956 Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 ||| |||| ||||| ||| | ||| | | | | || || ||||| ||||| Sbjct 47955 TGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTT 47896 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 || | || || | | | ||| | ||||| || || | ||| | ||| | | Sbjct 47895 CCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGC 47836 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 || |||| ||||| || ||||| || | ||||| ||| || || | | | |||| | Sbjct 47835 ACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAG 47776 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 ||| || | || || || ||||| || || || || | ||||||| ||| | || || Sbjct 47775 CATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCG 47716 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 ||| || | | || || || || || | || ||||| | ||||| || Sbjct 47715 AATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTT 47656 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGA 80318 || |||||| ||||| ||||| || || || |||||| | | ||||| || Sbjct 47655 TAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGA 47596 Query 80319 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 80378 |||||| | || || ||||| || | ||| || |||||||| || ||| || Sbjct 47595 CATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTT 47536 Query 80379 TTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTAC 80438 | |||| |||||||| |||||||| | || ||||| | |||||| || || Sbjct 47535 CTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAAC 47476 Query 80439 CGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--CTTGTTATTTATTTTCAAC 80496 | || ||||| | ||||||||| |||||||| | || ||| || | || || | Sbjct 47475 AGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATATTTGAG 47419 Query 80497 AAG-TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 ||| || ||| |||||| || || || |||||||||||||| ||| ||||| ||||| Sbjct 47418 AAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGGTCGTA 47359 Query 80556 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-G 80614 | ||| | |||||||| | || | | | || ||| ||| | ||| | Sbjct 47358 TACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTCCTTGG 47300 Query 80615 AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCA 80674 | || ||||| || || | ||||| || ||||| ||||||||| | | || || | Sbjct 47299 AGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGTGATGA 47240 Query 80675 CTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 80734 || | || | || || || | |||||| ||||| || || || || | ||| || | Sbjct 47239 CTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGCAGCGA 47180 Query 80735 AAATGGCATAATCTGGATG 80753 ||||| ||||||||||| Sbjct 47179 GGATGGCGTAATCTGGATG 47161 >seq85 Length=245923 Score = 134 bits (148), Expect = 2e-26 Identities = 253/369 (69%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||||| |||||||| | || ||||||||||| || || || Sbjct 84442 CACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGG 84501 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 84502 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 84561 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-ATGT-- 50136 || ||||| || ||||||||||| || || | || || | ||| || || || | Sbjct 84562 ATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGG-ACTCTCGATCTGA 84620 Query 50137 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||||| || || |||||| | | ||||| || || || ||||| | Sbjct 84621 AATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTC 84680 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| || | | ||| || ||||||| || || || || | ||| ||||| Sbjct 84681 GAAGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACAT 84740 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 ||| || |||||||| || ||||| || || || || || | || |||| | Sbjct 84741 TTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGGGGAC 84800 Query 50316 CTGCACTTC 50324 || ||||| Sbjct 84801 TTGGACTTC 84809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266851695880