Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq85 113 4e-20
>seq85
Length=245923
Score = 113 bits (124), Expect = 4e-20
Identities = 241/355 (68%), Gaps = 4/355 (1%)
Strand=Plus/Plus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|||||||| || || | |||||| || | ||||||||||| || || || |
Sbjct 84442 CACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGG 84501
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||| | ||||| || || | ||| || || | ||||| || ||||| |||||
Sbjct 84502 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 84561
Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839
|| || || || || ||||| || | || || | |||| | | | | | |||
Sbjct 84562 ATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTCGATCTGAA 84621
Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899
||||| ||||||||||| ||| ||| |||| || ||||| ||||| || | |
Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCG 84681
Query 13900 AATAAATGTT-CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACA 13957
|| | | || ||| |||| | ||| ||||||||| ||||| || ||| | ||||
Sbjct 84682 AAGAGGTATTGTCTTTGCTTTGGCTCTT-TAATGTATGTGTCAATGAG-AAGTGAGTACA 84739
Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012
|||| ||| |||||||| || ||||| || |||||||| || | |||||
Sbjct 84740 TTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTC 84794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478587501827880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |