Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq85 113 4e-20 >seq85 Length=245923 Score = 113 bits (124), Expect = 4e-20 Identities = 241/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 |||||||| || || | |||||| || | ||||||||||| || || || | Sbjct 84442 CACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGG 84501 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||| | ||||| || || | ||| || || | ||||| || ||||| ||||| Sbjct 84502 CCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAG 84561 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || || || || ||||| || | || || | |||| | | | | | ||| Sbjct 84562 ATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTGGACTCTCGATCTGAA 84621 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||| ||||||||||| ||| ||| |||| || ||||| ||||| || | | Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGCGTCG 84681 Query 13900 AATAAATGTT-CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TACA 13957 || | | || ||| |||| | ||| ||||||||| ||||| || ||| | |||| Sbjct 84682 AAGAGGTATTGTCTTTGCTTTGGCTCTT-TAATGTATGTGTCAATGAG-AAGTGAGTACA 84739 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 |||| ||| |||||||| || ||||| || |||||||| || | ||||| Sbjct 84740 TTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTC 84794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587501827880