Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq123 219 6e-52 >seq123 Length=109856 Score = 219 bits (242), Expect = 6e-52 Identities = 1333/2110 (63%), Gaps = 45/2110 (2%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||| | ||| | || || || || || | || || || | || || ||||||||||| Sbjct 49218 TTCTTGGTCAACGGTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACAT 49159 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 ||| || || ||||| | |||| || || |||||| || | ||| | | Sbjct 49158 GCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGT 49099 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || | ||||| |||| |||||| ||||| |||||||| || | || || Sbjct 49098 TGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGC 49039 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 ||||| | ||||| || | || | || ||||| | ||| || || | | || || Sbjct 49038 GGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGAT 48979 Query 71028 ATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 || ||||| ||||| || |||||||| || || || || ||||| || || || || Sbjct 48978 GTCGGTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTT 48919 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | || ||| | || | | || | || || ||||| || || Sbjct 48918 CATGTTGTCCGACCACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGAC 48859 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 |||||||| || | || || | ||| | ||| || || ||||| || || | | Sbjct 48858 CTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCA 48799 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 |||||||| ||||| || || | || || || |||||||| ||||| || | ||| Sbjct 48798 TTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGA 48739 Query 71265 ATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323 ||||| || ||||| ||| | || || |||| | | ||||| | |||||| || | Sbjct 48738 ATTTCGAACACCATACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTG 48680 Query 71324 ATGGTA-CA-ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGC 71381 |||| || || | || | | | | || || | Sbjct 48679 TTGGTGTCAGACCCCAGAGGTCGTACTGTAGCTGA--CCTTGAGAAATGGGCGAGCCCTC 48622 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441 ||| || |||||||| || || | || || ||||| || | ||| | | Sbjct 48621 ATAGGTTTCGTATGGACCAAGTTCCTTCGCAAGGTCACATGAAGCTGTCAGAGCTGCGTG 48562 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATA 71501 || || || ||||| || | | ||||| | | |||||| || ||| || || | Sbjct 48561 GTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-A 48503 Query 71502 ATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | |||| | || || || || || | |||||||| |||| ||| || |||| ||||| Sbjct 48502 GTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTC 48443 Query 71561 TCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | || | |||| ||||| || | || || || || || || || || || || Sbjct 48442 TGAAGTT-GCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTC 48384 Query 71620 AGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC 71678 || || || | | || || | || || || | ||| | ||| ||| || || || Sbjct 48383 AGGTT-CTTAGTCATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTC 48325 Query 71679 TATT------AC-AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731 | | || ||| | | ||| |||||||| |||| ||| || ||||| ||||| | Sbjct 48324 GACTTGGTCAACGAAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGT 48266 Query 71732 TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 71791 || ||| || | || ||||| ||||| | || |||||||||| || || | Sbjct 48265 CAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGT 48206 Query 71792 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTT 71851 | | |||||||| ||| |||| || || ||||| || || || || || | ||||| | Sbjct 48205 TCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCT 48146 Query 71852 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTAT 71910 || |||| | || | || || | ||| | | || | ||||| ||| | | | | Sbjct 48145 CAGTCTGGGCCTCCAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCT 48087 Query 71911 CTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 | ||| | || || || | | | | | | |||||||| || || | ||| || Sbjct 48086 CGGCCTTCCTTCTCATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTA-GCA--GT 48032 Query 71969 C---TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025 | ||| || ||| ||| || || || | | | ||| ||||| | | | || | Sbjct 48031 CAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCC 47972 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 72085 | ||||| || ||||| ||| |||| ||||| ||| | ||| | | | | || | Sbjct 47971 GCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTT 47912 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | ||||| ||||| || | || || | | | ||| | ||||| || || | Sbjct 47911 CCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAA 47852 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||| | ||| | | || || | ||||| || ||||| || | ||||| ||| || | Sbjct 47851 GGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTAT 47792 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 | | | | |||| | ||| || | || || || |||| || || || || | ||||| Sbjct 47791 TGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATAT 47732 Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325 || ||| | || ||||| ||| | | || || || || || | || |||| Sbjct 47731 AGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGA 47672 Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | | ||||| |||| |||||| ||||| ||||| || || ||| |||||| | Sbjct 47671 TCATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGA 47612 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 | ||||| |||||||| | || || ||||| || | ||| || |||| Sbjct 47611 TCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAG 47552 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 |||| || ||| || | |||| |||||||| |||||||| | || ||||| Sbjct 47551 CGTGTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTT 47492 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGAT--CTT 72563 | ||| || || || | || ||||| | ||| ||||| |||||||| | || ||| Sbjct 47491 CTCCATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTT 47434 Query 72564 GTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 || | || || | ||| || ||| |||||| || || || |||||||||||||| Sbjct 47433 CTTGTC-ATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGT 47375 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 ||| ||||| ||||| | ||| | || ||||| | || | | | || | | Sbjct 47374 TAAAATCTCGGTCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAG 47316 Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 ||| | ||| || || ||||| || || | ||||| || ||||| ||||||||| Sbjct 47315 TCATAAGTCTCCTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTG 47256 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | || || ||| | || | || || || | |||||| ||||| || || Sbjct 47255 TAGAGGTCTGTGATGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACT 47196 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTAT 72860 || || | ||| || || ||||| ||||||||||| ||| || || |||||| | Sbjct 47195 GCGATGCGGGCAGCGAGGATGGCGTAATCTGGATGGACAACAGT-CATGTATGCTGCTGT 47137 Query 72861 TTCTGCTGCC 72870 ||||||||| Sbjct 47136 CTCTGCTGCC 47127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137379534920