Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq123 219 6e-52
>seq123
Length=109856
Score = 219 bits (242), Expect = 6e-52
Identities = 1333/2110 (63%), Gaps = 45/2110 (2%)
Strand=Plus/Minus
Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847
||| | ||| | || || || || || | || || || | || || |||||||||||
Sbjct 49218 TTCTTGGTCAACGGTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACAT 49159
Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907
||| || || ||||| | |||| || || |||||| || | ||| | |
Sbjct 49158 GCCAGTCTTGAGACCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGT 49099
Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967
|| || | ||||| |||| |||||| ||||| |||||||| || | || ||
Sbjct 49098 TGGTTCCTTCAGATGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGC 49039
Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027
||||| | ||||| || | || | || ||||| | ||| || || | | || ||
Sbjct 49038 GGCCATCTGGATGATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGAT 48979
Query 71028 ATCTTCTGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084
|| ||||| ||||| || |||||||| || || || || ||||| || || || ||
Sbjct 48978 GTCGGTTGGAATGTTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTT 48919
Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144
|| | || ||| | || | | || | || || ||||| || ||
Sbjct 48918 CATGTTGTCCGACCACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGAC 48859
Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204
|||||||| || | || || | ||| | ||| || || ||||| || || | |
Sbjct 48858 CTGAAATTCGCCTGCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCA 48799
Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264
|||||||| ||||| || || | || || || |||||||| ||||| || | |||
Sbjct 48798 TTCATTATTGCCCAATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGA 48739
Query 71265 ATTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCG 71323
||||| || ||||| ||| | || || |||| | | ||||| | |||||| || |
Sbjct 48738 ATTTCGAACACCATACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTG 48680
Query 71324 ATGGTA-CA-ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGC 71381
|||| || || | || | | | | || || |
Sbjct 48679 TTGGTGTCAGACCCCAGAGGTCGTACTGTAGCTGA--CCTTGAGAAATGGGCGAGCCCTC 48622
Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441
||| || |||||||| || || | || || ||||| || | ||| | |
Sbjct 48621 ATAGGTTTCGTATGGACCAAGTTCCTTCGCAAGGTCACATGAAGCTGTCAGAGCTGCGTG 48562
Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATA 71501
|| || || ||||| || | | ||||| | | |||||| || ||| || || |
Sbjct 48561 GTAGATAGTCTCGAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-A 48503
Query 71502 ATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| |||| | || || || || || | |||||||| |||| ||| || |||| |||||
Sbjct 48502 GTCTAAGGGCAAGGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTC 48443
Query 71561 TCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619
| || | |||| ||||| || | || || || || || || || || || ||
Sbjct 48442 TGAAGTT-GCTCTTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTC 48384
Query 71620 AGATTTCTGACT-ATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATC 71678
|| || || | | || || | || || || | ||| | ||| ||| || || ||
Sbjct 48383 AGGTT-CTTAGTCATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTC 48325
Query 71679 TATT------AC-AAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731
| | || ||| | | ||| |||||||| |||| ||| || ||||| ||||| |
Sbjct 48324 GACTTGGTCAACGAAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGT 48266
Query 71732 TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 71791
|| ||| || | || ||||| ||||| | || |||||||||| || || |
Sbjct 48265 CAGGGGCGGTGTACTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGT 48206
Query 71792 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTT 71851
| | |||||||| ||| |||| || || ||||| || || || || || | ||||| |
Sbjct 48205 TCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCT 48146
Query 71852 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTAT 71910
|| |||| | || | || || | ||| | | || | ||||| ||| | | | |
Sbjct 48145 CAGTCTGGGCCTCCAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCT 48087
Query 71911 CTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968
| ||| | || || || | | | | | | |||||||| || || | ||| ||
Sbjct 48086 CGGCCTTCCTTCTCATACTTCTCGAACAGAGCC--TCGAACTCCTCACCGTA-GCA--GT 48032
Query 71969 C---TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025
| ||| || ||| ||| || || || | | | ||| ||||| | | | || |
Sbjct 48031 CAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCC 47972
Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 72085
| ||||| || ||||| ||| |||| ||||| ||| | ||| | | | | || |
Sbjct 47971 GCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTT 47912
Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145
| ||||| ||||| || | || || | | | ||| | ||||| || || |
Sbjct 47911 CCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAA 47852
Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205
||| | ||| | | || || | ||||| || ||||| || | ||||| ||| || |
Sbjct 47851 GGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTAT 47792
Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265
| | | | |||| | ||| || | || || || |||| || || || || | |||||
Sbjct 47791 TGTCAAAGACTCGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATAT 47732
Query 72266 AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 72325
|| ||| | || ||||| ||| | | || || || || || | || ||||
Sbjct 47731 AGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGA 47672
Query 72326 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385
| | ||||| |||| |||||| ||||| ||||| || || ||| |||||| |
Sbjct 47671 TCATGGCGCAGGTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGA 47612
Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445
| ||||| |||||||| | || || ||||| || | ||| || ||||
Sbjct 47611 TCAAGAAACATGATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAG 47552
Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505
|||| || ||| || | |||| |||||||| |||||||| | || |||||
Sbjct 47551 CGTGTGTGAACATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTT 47492
Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGAT--CTT 72563
| ||| || || || | || ||||| | ||| ||||| |||||||| | || |||
Sbjct 47491 CTCCATGAATGCCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTT 47434
Query 72564 GTTATTTATTTTCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622
|| | || || | ||| || ||| |||||| || || || ||||||||||||||
Sbjct 47433 CTTGTC-ATATTTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGT 47375
Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682
||| ||||| ||||| | ||| | || ||||| | || | | | || | |
Sbjct 47374 TAAAATCTCGGTCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAG 47316
Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741
||| | ||| || || ||||| || || | ||||| || ||||| |||||||||
Sbjct 47315 TCATAAGTCTCCTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTG 47256
Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801
| | || || ||| | || | || || || | |||||| ||||| || ||
Sbjct 47255 TAGAGGTCTGTGATGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACT 47196
Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTAT 72860
|| || | ||| || || ||||| ||||||||||| ||| || || |||||| |
Sbjct 47195 GCGATGCGGGCAGCGAGGATGGCGTAATCTGGATGGACAACAGT-CATGTATGCTGCTGT 47137
Query 72861 TTCTGCTGCC 72870
|||||||||
Sbjct 47136 CTCTGCTGCC 47127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671137379534920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |