Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq154 118 1e-21 seq85 111 2e-19 >seq154 Length=71981 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || |||||||| || |||||||| ||||| Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| |||||| || || |||||||| | |||||||||||||| || ||||| Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || | | || | |||||| ||| ||| || Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGAC 40838 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| |||| || || ||||| || ||||| Sbjct 40837 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 >seq85 Length=245923 Score = 111 bits (122), Expect = 2e-19 Identities = 307/466 (66%), Gaps = 5/466 (1%) Strand=Plus/Minus Query 50404 ACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGC 50463 || || ||| | ||| | || || |||||| || |||||| | || || ||||| | Sbjct 84605 ACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCC 84546 Query 50464 TTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAAC 50523 || || |||| || | | || | ||| | ||||||||||| || || |||| Sbjct 84545 TTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAAC 84486 Query 50524 GAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACG 50583 || | || || || ||||| || |||||||| ||||||||||| || || | | || Sbjct 84485 GAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTG--CTGCTCT-CG 84429 Query 50584 CGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGAC 50643 | | | || | ||| | ||| || || ||| || || |||||| | Sbjct 84428 CACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTCCAG 84369 Query 50644 ATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGAC 50703 ||||| |||| || |||| || || | ||||| || | ||||||||||| | | Sbjct 84368 ATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCGAAG 84309 Query 50704 ATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCG 50763 | ||| ||||||||||||| ||||| ||| | ||||| | |||| | ||| Sbjct 84308 CTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTAACCCG 84249 Query 50764 AAATACTATAATG-CACGTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAA 50822 || ||||| || | ||| || || ||| |||||| | ||||| || | | |||||| Sbjct 84248 AAGTACTACAAGGTCAC-CAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAA 84190 Query 50823 AACAAACTTTTTCGAAAGACGTGTAGGCGAATACAAAATGTTTGGT 50868 || || || ||||| | || || || || ||| ||| | |||| Sbjct 84189 GACCAATTTCTTCGAGAAGCGAGTGGGTGACTACCAAAAGGCTGGT 84144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013024723440