Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq85 206 4e-48 seq123 167 3e-36 seq93 86.0 9e-12 >seq85 Length=245923 Score = 206 bits (228), Expect = 4e-48 Identities = 575/864 (67%), Gaps = 31/864 (4%) Strand=Plus/Minus Query 125003 CATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGT 125062 || |||||| ||||| |||||| || ||||| || || | |||||||| ||||| | Sbjct 85014 CACCAGGTACCATGAGATTTGGCAAGCCTACAAGAAAGCCGAAGCCTCCTTCTGGACCGC 84955 Query 125063 CGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACTGAAACTG 125121 |||||| ||||| ||||| || || || |||| ||| | || | | || || | Sbjct 84954 CGAAGAAGTCGACCTGTCGAAAGATCTCCACGACTGGCACCACAAGCTCAACGATGAC-G 84896 Query 125122 AGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACG 125181 | || | || | || ||| | | || ||||| |||| ||| || || |||||||||| Sbjct 84895 AACGTTACTTCGTTTCCCACGTCCTCGCTTTCTTCGCCGCCTCGGACGGCATCGTCAACG 84836 Query 125182 ACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTT 125238 | || || || || || ||||| || | ||| | || || | ||||||| Sbjct 84835 AGAACCTTGTCGAG-CGCTTCTCCGGCGAAGT--CCAAGTCCCCGAAGCCCGCTGCTTTT 84779 Query 125239 ACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298 | || ||||| |||||||| || ||| | ||| ||||||||||| || ||||||| Sbjct 84778 ATGGCTTCCAGATCATGATGGAAAACATCCACAGCGAAATGTACTCACTTCTCATTGACA 84719 Query 125299 TGTACATTCGCGATCCGCAACGTAAACACATG--CTCTTTAACGCAATCGACACGGTGCC 125356 |||||| || || || | ||| ||| ||||| |||| ||||| || | || Sbjct 84718 CATACATTAAAGAGCC--AAAGCAAAGACAATACCTCTTCGACGCCATCGATACAATTCC 84661 Query 125357 GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGT 125415 | || | || || ||| |||||| | || ||||| || ||| | ||| | | Sbjct 84660 TTGCATTAGAAAGAAAGCTGAATGGGCTCTCCGCTGGATTTCAGATCGAGA-GTCCACCT 84602 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 ||| | | ||||| || || ||||| || || || |||||||| || || || | Sbjct 84601 TTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCG 84542 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | ||||||| |||||||||||||| || ||||||||||| || || | ||||| Sbjct 84541 CCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAAC 84482 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAACT-- 125592 |||| || || ||||||||| | ||| |||||||| || ||| | ||||| || Sbjct 84481 TTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCTCGCACCTTA 84422 Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCG 125652 | | || ||| || | | || ||| ||||| | | ||| |||| Sbjct 84421 ACCACCGCCCC----TCAAAGGAACTTAT--CCAGGCCATCATCGT------CGAGGCCG 84374 Query 125653 TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACT 125712 | ||| || ||||| || || ||||| | || || || | | |||||||||| Sbjct 84373 TCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACT 84314 Query 125713 GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAGTTGATT 125771 ||||| ||| ||||||| ||||| || || || || || | ||| | | | | Sbjct 84313 CGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTA 84254 Query 125772 GGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 ||| ||| ||||| | || ||||| ||||| || ||| | ||| || |||| | Sbjct 84253 ACCCG-AAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCG 84195 Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855 || |||||||| || ||||||||| Sbjct 84194 GGCAAGACCAATTTCTTCGAGAAG 84171 >seq123 Length=109856 Score = 167 bits (184), Expect = 3e-36 Identities = 380/562 (68%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGT---ACAATGCAATGTCA 96863 |||||||||| | | ||||| || || |||||| || | | ||||| | || | Sbjct 47743 ACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATAC--TG-CT 47799 Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||||||||| || | || || || | ||||| ||| | || || Sbjct 47800 CGATACGTCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGAGCCC 47859 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || ||||| | | | | || || ||| || ||||| | Sbjct 47860 TGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGAAGTT 47919 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 || || | || |||||||| || |||||| |||||| ||||||||||||| || Sbjct 47920 CGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGTTGAG 47979 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||| | |||||| || | |||||| || | || ||| | || || ||| Sbjct 47980 AAAAACGGAG---ACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACTGC 48036 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC-GTGAG 97159 | || || ||||| ||||| || | | || ||| | || |||||| | | || Sbjct 48037 TACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGAGAAGGAAGGCCGAGGCCGACAG 48096 Query 97160 ACGAGTCGATGCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 || | || | |||| |||| | |||| | |||||| || ||| ||| |||||||||| Sbjct 48097 ACAA-TCAAGGCAC-AGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTGGAA 48154 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| ||||||||||| || || | || || || || ||||||||| Sbjct 48155 ACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGGGCA 48214 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338 |||||||| |||||| ||||||| ||||| | |||||| || | || |||||| | Sbjct 48215 CCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCTGACGAGGTCG 48274 Query 97339 CAGTTTGCGTTCTGGCATCGGT 97360 | || ||| | |||| || || Sbjct 48275 CCGTCTGCAATTTGGCTTCTGT 48296 >seq93 Length=241465 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783 ||||||| ||||| || || | ||||| ||||||||||| ||| | ||||| |||||| Sbjct 80707 CCACGGGACGTCATAGCCGGTGCACCGATTCTGATGCCGCATGGCGTCAGAGCACTCTTG 80648 Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGAT 126815 |||||||| | | ||| |||||||| ||||| Sbjct 80647 TCTCCGGGAATGGAGTTCTTGTTGCAGGCGAT 80616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057189876920