Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq85 206 4e-48
seq123 167 3e-36
seq93 86.0 9e-12
>seq85
Length=245923
Score = 206 bits (228), Expect = 4e-48
Identities = 575/864 (67%), Gaps = 31/864 (4%)
Strand=Plus/Minus
Query 125003 CATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGT 125062
|| |||||| ||||| |||||| || ||||| || || | |||||||| ||||| |
Sbjct 85014 CACCAGGTACCATGAGATTTGGCAAGCCTACAAGAAAGCCGAAGCCTCCTTCTGGACCGC 84955
Query 125063 CGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACTGAAACTG 125121
|||||| ||||| ||||| || || || |||| ||| | || | | || || |
Sbjct 84954 CGAAGAAGTCGACCTGTCGAAAGATCTCCACGACTGGCACCACAAGCTCAACGATGAC-G 84896
Query 125122 AGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACG 125181
| || | || | || ||| | | || ||||| |||| ||| || || ||||||||||
Sbjct 84895 AACGTTACTTCGTTTCCCACGTCCTCGCTTTCTTCGCCGCCTCGGACGGCATCGTCAACG 84836
Query 125182 ACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTT 125238
| || || || || || ||||| || | ||| | || || | |||||||
Sbjct 84835 AGAACCTTGTCGAG-CGCTTCTCCGGCGAAGT--CCAAGTCCCCGAAGCCCGCTGCTTTT 84779
Query 125239 ACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACA 125298
| || ||||| |||||||| || ||| | ||| ||||||||||| || |||||||
Sbjct 84778 ATGGCTTCCAGATCATGATGGAAAACATCCACAGCGAAATGTACTCACTTCTCATTGACA 84719
Query 125299 TGTACATTCGCGATCCGCAACGTAAACACATG--CTCTTTAACGCAATCGACACGGTGCC 125356
|||||| || || || | ||| ||| ||||| |||| ||||| || | ||
Sbjct 84718 CATACATTAAAGAGCC--AAAGCAAAGACAATACCTCTTCGACGCCATCGATACAATTCC 84661
Query 125357 GTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACAAGTCTTCGT 125415
| || | || || ||| |||||| | || ||||| || ||| | ||| | |
Sbjct 84660 TTGCATTAGAAAGAAAGCTGAATGGGCTCTCCGCTGGATTTCAGATCGAGA-GTCCACCT 84602
Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475
||| | | ||||| || || ||||| || || || |||||||| || || || |
Sbjct 84601 TTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCG 84542
Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535
| ||||||| |||||||||||||| || ||||||||||| || || | |||||
Sbjct 84541 CCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAAC 84482
Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG-TTTCGCAACT-- 125592
|||| || || ||||||||| | ||| |||||||| || ||| | ||||| ||
Sbjct 84481 TTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCTCGCACCTTA 84422
Query 125593 ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCG 125652
| | || ||| || | | || ||| ||||| | | ||| ||||
Sbjct 84421 ACCACCGCCCC----TCAAAGGAACTTAT--CCAGGCCATCATCGT------CGAGGCCG 84374
Query 125653 TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACT 125712
| ||| || ||||| || || ||||| | || || || | | ||||||||||
Sbjct 84373 TCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACT 84314
Query 125713 GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT-GTACGAGTTGATT 125771
||||| ||| ||||||| ||||| || || || || || | ||| | | | |
Sbjct 84313 CGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTA 84254
Query 125772 GGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831
||| ||| ||||| | || ||||| ||||| || ||| | ||| || |||| |
Sbjct 84253 ACCCG-AAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCG 84195
Query 125832 GGTAAGACCAACTTTTTCGAGAAG 125855
|| |||||||| || |||||||||
Sbjct 84194 GGCAAGACCAATTTCTTCGAGAAG 84171
>seq123
Length=109856
Score = 167 bits (184), Expect = 3e-36
Identities = 380/562 (68%), Gaps = 16/562 (3%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGT---ACAATGCAATGTCA 96863
|||||||||| | | ||||| || || |||||| || | | ||||| | || |
Sbjct 47743 ACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATAC--TG-CT 47799
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| ||||||||||| || | || || || | ||||| ||| | || ||
Sbjct 47800 CGATACGTCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGAGCCC 47859
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || ||||| | | | | || || ||| || ||||| |
Sbjct 47860 TGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGAAGTT 47919
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040
|| || | || |||||||| || |||||| |||||| ||||||||||||| ||
Sbjct 47920 CGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGTTGAG 47979
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
|| |||| | |||||| || | |||||| || | || ||| | || || |||
Sbjct 47980 AAAAACGGAG---ACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGGTTTATCTGACTGC 48036
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATAC-GTGAG 97159
| || || ||||| ||||| || | | || ||| | || |||||| | | ||
Sbjct 48037 TACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGAGAAGGAAGGCCGAGGCCGACAG 48096
Query 97160 ACGAGTCGATGCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
|| | || | |||| |||| | |||| | |||||| || ||| ||| ||||||||||
Sbjct 48097 ACAA-TCAAGGCAC-AGAAGTTGTGGTATGCCATCTTGGAGGCCCAGACTGAGACTGGAA 48154
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| ||||||||||| || || | || || || || |||||||||
Sbjct 48155 ACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAAGTAATCAGAAGAACTTGGGCA 48214
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG 97338
|||||||| |||||| ||||||| ||||| | |||||| || | || |||||| |
Sbjct 48215 CCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGTACACCGCCCCTGACGAGGTCG 48274
Query 97339 CAGTTTGCGTTCTGGCATCGGT 97360
| || ||| | |||| || ||
Sbjct 48275 CCGTCTGCAATTTGGCTTCTGT 48296
>seq93
Length=241465
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783
||||||| ||||| || || | ||||| ||||||||||| ||| | ||||| ||||||
Sbjct 80707 CCACGGGACGTCATAGCCGGTGCACCGATTCTGATGCCGCATGGCGTCAGAGCACTCTTG 80648
Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGAT 126815
|||||||| | | ||| |||||||| |||||
Sbjct 80647 TCTCCGGGAATGGAGTTCTTGTTGCAGGCGAT 80616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741057189876920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |