Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq154 118 8e-22 >seq154 Length=71981 Score = 118 bits (130), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| |||||| | || | || || || || ||||| || ||||||||||| Sbjct 41474 TGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATC-- 41417 Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 | | || ||| | || || | |||||||| ||| | ||||| || || ||||| Sbjct 41416 TGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGG 41357 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 |||||| ||||| ||||| ||||| ||| || | || |||||||| ||| Sbjct 41356 TGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTC 41297 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || |||||||| ||||| |||||||| |||||||||||||| Sbjct 41296 CACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | || || ||||| ||||| || || || || || || |||||||| | Sbjct 41246 TGCCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCAC 41187 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | ||| ||||||| | ||| || ||||| | || | || || |||||| | Sbjct 41186 TCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAG 41127 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || || || || ||||||||||| ||| | || ||||||||| | || | Sbjct 41126 GAATACCCTCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAA 41067 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || || || ||||| |||| || || |||||||| ||||| Sbjct 41066 CCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178242149197