Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq154 147 5e-30
seq85 93.3 1e-13
>seq154
Length=71981
Score = 147 bits (162), Expect = 5e-30
Identities = 162/213 (76%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| ||||| || | || ||||| ||||| ||||| || ||| | ||||| ||||||
Sbjct 41229 AGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCT 41170
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || |||||||| || || | ||| || || ||||| || || || ||||||
Sbjct 41169 TCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 41110
Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|| || |||||| || ||||| || | ||||||| || || ||||| || || || ||
Sbjct 41109 TGGAT-TTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGT 41051
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||||| | ||| || ||||| ||||||||
Sbjct 41050 CTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Score = 127 bits (140), Expect = 5e-24
Identities = 151/202 (75%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||||||||| || ||||| | || | ||||||||| || || || |||
Sbjct 40986 GTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAAGCTGCTTACCA 40927
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | || || |||||||| || || || || || |||||||| ||| ||
Sbjct 40926 GCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTT-GCTCTT 40868
Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
||||| || | || || || | ||| ||||| || || || ||||| ||||| || ||
Sbjct 40867 GACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 40808
Query 104542 TTTTACAAATATCTGCATTTTG 104563
|| || || ||||||||||||
Sbjct 40807 CTTGACGAAGATCTGCATTTTG 40786
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404
|| || || || || | |||||| ||||||||||| || || || || | |||| |||
Sbjct 41460 CTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCA 41401
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
|| || || ||||| || || || || | || ||| || || || || || ||||| ||
Sbjct 41400 TCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTG 41341
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
|| || || || | || || || || | |||||| | ||| || || ||||| ||
Sbjct 41340 TCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATG 41281
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || ||||| ||||| || |||||
Sbjct 41280 GTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
>seq85
Length=245923
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
|| || ||||||||||| |||||||| ||||| || || || || ||| | ||||| |||
Sbjct 84587 GTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGG 84528
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
| ||||| |||| || ||||| || | || ||||| |||||| | || | |||||
Sbjct 84527 CTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGAC 84468
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| || | ||| |||||| || ||
Sbjct 84467 GAGGGCATGCACACCGACTTTGCGTG 84442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151395198752636
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |