Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq154 147 5e-30 seq85 93.3 1e-13 >seq154 Length=71981 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | || ||||| ||||| ||||| || ||| | ||||| |||||| Sbjct 41229 AGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCT 41170 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || |||||||| || || | ||| || || ||||| || || || |||||| Sbjct 41169 TCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 41110 Query 104468 TGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || || |||||| || ||||| || | ||||||| || || ||||| || || || || Sbjct 41109 TGGAT-TTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGT 41051 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| | ||| || ||||| |||||||| Sbjct 41050 CTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 127 bits (140), Expect = 5e-24 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || ||||| | || | ||||||||| || || || ||| Sbjct 40986 GTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAAGCTGCTTACCA 40927 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || || |||||||| || || || || || |||||||| ||| || Sbjct 40926 GCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTT-GCTCTT 40868 Query 104483 -ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | ||| ||||| || || || ||||| ||||| || || Sbjct 40867 GACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 40808 Query 104542 TTTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 40807 CTTGACGAAGATCTGCATTTTG 40786 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || || || | |||||| ||||||||||| || || || || | |||| ||| Sbjct 41460 CTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCA 41401 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 || || || ||||| || || || || | || ||| || || || || || ||||| || Sbjct 41400 TCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTG 41341 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || || || | || || || || | |||||| | ||| || || ||||| || Sbjct 41340 TCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATG 41281 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| ||||| || ||||| Sbjct 41280 GTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 >seq85 Length=245923 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||||||||| |||||||| ||||| || || || || ||| | ||||| ||| Sbjct 84587 GTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGG 84528 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 | ||||| |||| || ||||| || | || ||||| |||||| | || | ||||| Sbjct 84527 CTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGAC 84468 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || || | ||| |||||| || || Sbjct 84467 GAGGGCATGCACACCGACTTTGCGTG 84442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395198752636