Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq154 122 7e-23
>seq154
Length=71981
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || ||||| || | ||| | || ||||| ||| || |||||||||||||| | |
Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| ||| | ||||||||||| || || || | || || |||||||| || ||
Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| || ||||||||| |||||| ||| | | |||||||| | || |||
Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||| |||||||||||| || ||||||||||| |||||||| |||||
Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|||| ||||| || ||||| || || ||||||||| ||| ||| |||| |||
Sbjct 41226 ACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCC 41167
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|| |||||||| | | || | |||||||| || || | || ||||| |||
Sbjct 41166 AGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGG 41107
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
||||| ||||| | | |||||||||| |||||| ||||| || || || |||
Sbjct 41106 ATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTA 41047
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | || |||||||||||||||||
Sbjct 41046 CCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576
|| || || ||||| |||||||| |||||||||||||||| || || || |||||||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAG-AAAGAGTACGACCGTCCTC 41624
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| ||||| ||| | | || | || ||||||||| ||| | || |||||||||
Sbjct 41623 CAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 41564
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | || || || | ||| ||| | || || || ||
Sbjct 41563 GATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTT 41504
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| || ||||| ||||| |||||
Sbjct 41503 GCCGGTGAGTGTCTTCACGAAAATTTGCAT 41474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421250085922217
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |