Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq154 127 2e-24 >seq154 Length=71981 Score = 127 bits (140), Expect = 2e-24 Identities = 176/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||| ||||| || ||| | ||||| ||||| || || || | | Sbjct 41484 AAAATTTGCATGCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATG 41425 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| || || ||| || ||||||||||||||| || | ||||| || | | Sbjct 41424 TTGTAATCTGACA-AG-GTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCT 41367 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||| ||||||||||| ||||| | ||||| | ||| ||| ||| || | Sbjct 41366 GCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTAT 41307 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| || || || | || |||||||| || || |||||||| ||||| || |||| Sbjct 41306 CAGATGATTCCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCA 41247 Query 95007 TGC 95009 ||| Sbjct 41246 TGC 41244 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || ||||| || || | ||| || ||||||| ||| || || Sbjct 40999 CACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTC 40940 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | || || | | |||||| || |||||||| || || ||||| | Sbjct 40939 AAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTG 40880 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||| | ||| |||||| | ||||| |||| |||||||| || Sbjct 40879 AATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTT 40820 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || ||||||||||| Sbjct 40819 GCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || || | | ||| | || | ||| | ||| |||||||| || | Sbjct 41257 AAAAATTTGCATGCCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGAT 41198 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| |||| ||| | || ||||| || || || ||||||| | || || Sbjct 41197 ATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTG 41138 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||| || ||||||||||| || || || | ||||| |||||| | ||| || || Sbjct 41137 CTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATC 41078 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | ||||| || || ||||| | || |||||||| |||||||| Sbjct 41077 GGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Query 95008 GC 95009 || Sbjct 41017 GC 41016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289984010120