Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18 141 1e-29 seq19 134 2e-27 >seq18 Length=467604 Score = 141 bits (156), Expect = 1e-29 Identities = 191/264 (72%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 16435 TAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 || |||||| ||||| | | ||||| |||||||| || || ||||||||||||||| | Sbjct 181450 TATGCGTCA---CAGATTT-TGCGAGACAACATCCAGGGCATTACCAAGCCAGCTATCAG 181395 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 ||||| |||||||| ||||| ||||||||| |||| | || | ||||| |||| || Sbjct 181394 ACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATCTCCGCTATGATTTATGAGGAGACGCG 181335 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | || | |||| ||| | | | || |||| |||||| || || || || || Sbjct 181334 AGGCGTCCTCAAGACCTTTTTAGAATCAGTCATCCGAGATGCTGTCACATACACAGAACA 181275 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || | ||||| || || || | || | |||||||| ||||||| |||||||| Sbjct 181274 CGCAAAGAGAAAGACCGTTACATCTCTTGACGTTGTCTATGCTCTGAAACGACAAGGCCG 181215 Query 16675 TAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||| || |||| Sbjct 181214 AACGCTGTATGGTTTCGGTGGTTA 181191 >seq19 Length=499595 Score = 134 bits (148), Expect = 2e-27 Identities = 183/254 (72%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 16446 GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTC 16505 |||||| ||||||||| ||||| || || ||||| || || || ||||| |||||||||| Sbjct 462832 GCAGAT-TCTTCGAGACAACATTCAGGGCATCACAAAACCCGCCATCCGACGTCTGGCTC 462890 Query 16506 GTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGA 16565 |||| || || ||||||||| |||| | || |||| ||||||| || | || | | Sbjct 462891 GTCGAGGAGGTGTCAAGCGTATCTCGGCGATGATCTACGAAGAGACACGAGGCGTCCTCA 462950 Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 | |||||| || |||| |||| || ||| || || || || ||||| || | | Sbjct 462951 AATCCTTCCTTGAGTCCGTCATCCGAGACGCTGTCACATACACGGAACACGCCAAGAGAA 463010 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 |||| ||||| || |||| |||||||||| | || | ||||| || | | || | Sbjct 463011 AGACCGTCACATCTCTGGACGTCGTCTATGCTCTCAAGAGACAAGGACGAACTCTCTACG 463070 Query 16686 GTTTTGGAAGTTAA 16699 |||| || ||||| Sbjct 463071 GTTTCGGTGGTTAA 463084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075001595381