Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq123 322 1e-82 >seq123 Length=109856 Score = 322 bits (356), Expect = 1e-82 Identities = 1068/1632 (65%), Gaps = 38/1632 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||| |||| || | | |||||| || || | ||| | || ||||| || Sbjct 47542 TTCACACACGCTTCGCCCACCCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCA 47601 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | | |||||||| || || |||||||| |||| || || || |||| Sbjct 47602 TG-TTTCTTGATCGACATGAAGGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGAC 47660 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTG 363724 || || | || || |||||||| ||||| ||||| | | || ||||||| |||| | Sbjct 47661 CTGCGCCATGATCTCAAAGAATGCCGGCGGTATTGGATTGAACG-TCCACAAAATTCGAG 47719 Query 363725 C-ACAGAACAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 | || | | || || ||| |||||| || || || || || || || ||||| Sbjct 47720 CGACTGG-CTCCTATAT-CGCAGGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCT 47777 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 || || |||||||||||||| | |||||||||||||| || ||| | || || Sbjct 47778 CCGAGTCTTTGACAATACTGCTCGATACGTCGACCAGGGCGGCAACAAGAGACCTGGTGC 47837 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 ||||| | || || ||||| || |||||| | ||||||| || | |||||||| Sbjct 47838 CTTTGCCGTTTACCTTGAGCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAA 47897 Query 363903 AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGA 363962 ||| ||||| || ||| | ||||| |||||| |||| || || || ||| | | || Sbjct 47898 GAACCACGGAAAGGAAGAAGTTCGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGA 47957 Query 363963 CCATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 | || |||||||| || ||| | || || | ||| | ||||| ||||| |||| Sbjct 47958 TCTGTTCATGAAGCGGGTTGAGAAAAACGG--AG-ACTGGACTCTCTTCTGCCCCAACGA 48014 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 | ||||||| | || || | ||||| || | | ||||| | ||| |||||||| Sbjct 48015 AGCTCCAGGTTTATCTGACTGCTACGGTGAGGAGTTCGAGGCTCTGTTCGAGAAGTATGA 48074 Query 364080 -ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 | | ||| |||| || ||||||| ||||||||| | |||| ||||||| ||| Sbjct 48075 GAAGGAAGGCCGAGGC-CGACAGACAATCAAGGCACAGAAGTTGTGGTATGCCATCTTGG 48133 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | | |||| |||||| |||| || | ||| | ||||| || | |||||| | || Sbjct 48134 AGGCCCAGACTGAGACTGGAAACCCATTCATGCTCTACAAGGACGCCTGCAACAGAAAAA 48193 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 || ||| || || | || || || || |||| | || || || || ||||| | Sbjct 48194 GTAATCAGAAGAACTTGGGCACCATCAAGTCCTCCAACTTGTGCACAGAAATCATTGAGT 48253 Query 364259 ACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG 364318 ||||||| || |||||| ||||| || || | || || | || | || | || | Sbjct 48254 ACACCGCCCCTGACGAGGTCGCCGTCTGCAATTTGGCTTCTGTTGCTTTGCCATCTTTCG 48313 Query 364319 T------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGC 364370 | | || ||| | |||| | || | || || | | | ||||| Sbjct 48314 TTGACCAAGTCGAAGGTCAATATGACTTTGGCCGACTGCACGAGGTCATCCAGGTCATG- 48372 Query 364371 TACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGC 364429 ||| || || ||||| | ||||| | || || || || | || ||||| || Sbjct 48373 -ACTAAGAACCTGAACAAGATCATCGAGATCAACTACTACCCCGTCCCGGAAGCGAGAAA 48431 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 | | || | | || || || |||||||||||||| || ||||| ||||| | ||| Sbjct 48432 GAGC-AACTTCAGACACCGACCCATTGGTCTTGGTGTTCAAGGCCTTGCTGATGCTTTCC 48490 Query 364490 TGATGCTC-AAGA-TGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | ||| | ||| || | || ||||| || || || | || || | | || || Sbjct 48491 T--TGCCCTTAGACTGCCGTTCGATTCTCCCGAAGCAAGACAGCTCAACATTCAAATATT 48548 Query 364548 TGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGA-TTTGGCAAAAACCAAGGGAA 364606 || || || || || || |||| ||||| ||||| ||| || | | || Sbjct 48549 CGAGACTATCTACCACGCAGCTCTGACAGCTTCATGTGACCTTGCGAAGGAACTTGGTCC 48608 Query 364607 AGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 | ||| || |||||||| || || |||| || || | | |||| || || ||| Sbjct 48609 A-TACGAAACCTATGAGGGCTCGCCCATTTCTCAAGGTCAGCTACAGTACGACCTCTGGG 48667 Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATG 364726 | | || ||| | | || ||| ||||||| | | |||| || || ||| Sbjct 48668 GTCTGACACCAACAGACCTTTGGGACTGGGAGGCCTTGAAAGCCAAGATTGCTCAGTATG 48727 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 || ||| || || || || || |||||||| || || ||||| | ||||| | | Sbjct 48728 GTGTTCGAAATTCTCTTCTTGTCGCACCCATGCCGACCGCCTCTACGTCGCAGATATTGG 48787 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | || || || |||||||| || | |||| ||| | || || || || || | | | Sbjct 48788 GCAATAATGAATGCTTCGAGCCATATACATCCAACATCTACTCCCGTCGTGTGTTAGCAG 48847 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGG 364906 | ||||||| ||| || ||| | || |||| ||||| || | || |||||| Sbjct 48848 GCGAATTTCAGGTCGTCAATCCATGGCTGCTCAAAGATCTCGTTGATCTTGGCCTGTGGT 48907 Query 364907 GTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGAT 364966 |||| |||||||||| ||||| |||| ||||| | |||||| | ||| Sbjct 48908 CGGACAACATGAAGAACAGAATCATTGCCGAGGGCGGTTCAATTCAGAACGTACCAAACA 48967 Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 ||||| || | || | | ||||| || || ||||| || || | ||||| ||| Sbjct 48968 TTCCAACCGACATCAAAGCACTCTACAAGACTGTCTGGGAGATCTCTCAGAGAACTATCA 49027 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | ||||| || ||||| ||||| || || |||| |||||||| ||| ||||| Sbjct 49028 TCCAGATGGCCGCTGATCGAGGTGCCTTCATTGATCAGTCACAGTCGTTGAAC--ATTCA 49085 Query 365087 --TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGG 365144 ||| | |||||| | |||| | || || ||||| ||| || |||||| || Sbjct 49086 TCTGAAGGAACCAACCATGGGCAAGATCACTTCTATGCACTTCGCTGGCTGGAAAATGGG 49145 Query 365145 TCTTAAGACAGG 365156 ||| ||||| || Sbjct 49146 TCTCAAGACTGG 49157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303349976269694