Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq154 138 1e-27 seq123 132 5e-26 seq85 122 8e-23 seq43 91.5 1e-13 >seq154 Length=71981 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| ||||| | |||||| | || | || ||||| || |||||||||||||| Sbjct 41473 GCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGA 41414 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||||| ||||| ||||||||| |||| || ||||||||||| || || Sbjct 41413 CAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGG 41354 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||||||| ||| | | || | ||||| | || || | Sbjct 41353 AATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCAC 41294 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | |||||| || || |||||||| || ||||| |||||| Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| ||||| || || | ||| || || || ||||||||||| ||||| Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||| || |||||||| || ||| | || | ||| |||||||| ||||| Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | || | || || |||| |||| Sbjct 40897 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGAC 40838 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || ||||| || ||||| |||||||| Sbjct 40837 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || |||| || | ||||| ||||| || || |||||||| || Sbjct 41245 GCCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACT 41186 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || || ||||| || || |||| | ||||||||||| ||||| Sbjct 41185 CAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGG 41126 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || |||||| ||||| | || | ||||||| ||||| | Sbjct 41125 AATACCCTCCTTATCCTGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAAC 41066 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || ||||| || | || || || |||||||||||| Sbjct 41065 CTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCATG 41017 >seq123 Length=109856 Score = 132 bits (146), Expect = 5e-26 Identities = 548/852 (64%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 145631 GACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCAC 145690 || |||||||| || || || ||| || | | || |||| | | ||| || | |||| Sbjct 48293 GAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCAC 48234 Query 145691 AAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCC 145750 || ||| | |||||||| |||| || | |||||||||||| |||||||| |||||| Sbjct 48233 AAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCC 48174 Query 145751 TTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAG 145810 |||||||||||| | || |||||||| ||| | ||||| ||| | ||| Sbjct 48173 TTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAAC 48114 Query 145811 TCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCC 145870 | ||| || | ||| || ||||| || | || || ||| | | || || Sbjct 48113 TTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCC 48054 Query 145871 TCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGAC 145930 || ||| | ||||||||| || || | || ||| | |||||| || | || | | Sbjct 48053 TCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAGAAGAGAGTC 47994 Query 145931 CATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATC 145990 || | ||||| | || |||| ||| |||| |||||| ||| || ||||| | | Sbjct 47993 CAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAAC 47934 Query 145991 AAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTC---AAATTAAGCACACT- 146046 || || || || | | | || || || || |||| | || ||| |||| Sbjct 47933 AAATCACGAGC-ACGAACTTCTTCCTTTCCGTGGTT--CTTCCGGAGGTTCAGC-CACTC 47878 Query 146047 ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCC 146103 | ||| || |||||||| || |||| || ||||| | ||| || | || | ||||| Sbjct 47877 AAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCC 47818 Query 146104 ACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCT 146163 |||||||| |||| || | | |||| |||||| || | ||| || | | |||| | Sbjct 47817 GCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758 Query 146164 GGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCAC 146223 | | |||||| || || || ||| | || | || || |||| Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698 Query 146224 GCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCC 146283 || | ||||||| | | ||| || || ||||||| ||||| |||||||| || Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638 Query 146284 GTCAATGCTATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGC 146341 || || || |||| ||| ||| || || || || |||| || || | || Sbjct 47637 CTCGATCGAGTCCTCCTTC--ATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGT 47580 Query 146342 GTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGA 146401 || || || ||| | || || ||||| || ||||| || || ||| | Sbjct 47579 GTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATGAGATTG 47520 Query 146402 TACGTTTCGAT-AGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 || || || || | | ||| | || || || ||||||||||| | || |||||||| || Sbjct 47519 TATGTCTCAATGACCTTCTCG-ATATCTTCTCCATGAATGCCAACAGACACGCGCATCAG 47461 Query 146461 CATGTGTTGGGG 146472 |||||| || || Sbjct 47460 CATGTGCTGTGG 47449 >seq85 Length=245923 Score = 122 bits (134), Expect = 8e-23 Identities = 310/464 (67%), Gaps = 27/464 (6%) Strand=Plus/Minus Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| ||||| |||| |||||||| |||||| || |||| || || ||| Sbjct 84605 ACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCTCC 84546 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 || ||| ||||||| | |||| || | ||| | ||||||||||||| || || ||| Sbjct 84545 TTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTTACCTTCTCCAA 84487 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321 ||| || || || || ||||||||| |||| || ||||||||||| || || || Sbjct 84486 CGAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCT------ 84433 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCG-------TGCTGAGCATGTTCAAGGAG 46374 ||| |||| || | ||||| || | | | | ||| || ||| Sbjct 84432 CTC----GCACCTTAA-CCACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAG 84378 Query 46375 GCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATG 46434 || || || ||| | || || | || | || || |||| ||| || ||||||||| Sbjct 84377 GCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATG 84318 Query 46435 AACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGT--GCA-G 46491 ||| | || ||| | ||||| ||||| || || ||||| ||| | || | | | Sbjct 84317 AACTCGAAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATG 84258 Query 46492 CTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCC 46551 | || |||||| | | | | |||||| ||||| |||||| | |||||||| Sbjct 84257 GGTAAC---CCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCT 84201 Query 46552 CTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || | |||||| || ||||| ||||| ||||| || || || || Sbjct 84200 CTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTA 84157 >seq43 Length=153456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 131032 TGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGC 131091 |||| ||||||||||| || |||||||| ||||| | |||||| ||||| || ||| Sbjct 109503 TGTAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTAAGGGTGCGACCATCCTCGAGTTGC 109444 Query 131092 TTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||||| ||| |||| || |||||||| || || || || || || ||||| Sbjct 109443 TTGCCGGCGAAGATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTC 109394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011519665280