Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq188 140 2e-28 seq154 122 6e-23 seq87 120 2e-22 >seq188 Length=8484 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 7140 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7081 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7080 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7046 >seq154 Length=71981 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || || || |||||||| ||||| ||||||||||| | | ||| |||| || Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||||||||| || || ||||| ||||| | || | || || |||||| Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | || ||| || || ||||| || || ||||| || || Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || |||||||| || |||||| Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||||| || |||||||||||| |||| || |||| || | ||| Sbjct 41220 TGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGC 41161 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || ||||| || || || || || |||| || | || || || ||| ||||| Sbjct 41160 TTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTG 41101 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || ||||| | ||||| || | || || || ||||| ||| Sbjct 41100 CTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTC 41041 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 || || ||||| || ||||||||| Sbjct 41040 AATGTCTTCACAAAAATCTGCATG 41017 >seq87 Length=330109 Score = 120 bits (132), Expect = 2e-22 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 |||| || ||| | |||||||||||||| ||| |||| | ||||| | || || | Sbjct 169368 ATGTCGCCGACCCCTTCTACCGCTACAAGATGGAGCGCCTTCAGTCCAAGATTGAAGGCA 169427 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306 |||| || ||||| |||||||| ||| ||| |||| || || || | || | || Sbjct 169428 AGGGCAATGGTATCAAAACCGTTGTTGCCAATTTGCCGTCTGTTGCCCAGTCTCTGGCAC 169487 Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366 | ||| | ||||| | ||||||||||| | |||||| || |||||||| | Sbjct 169488 GTCCTCCAGCCTACATCATCAAATATTTCGGCTTCGAACTCGGTGCTCAGACCAACACCA 169547 Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426 ||| ||| | || || | ||| | |||||| | || | || | |||| ||||||| | Sbjct 169548 ATCCCAAGGATGATCGATGGATCATCAACGGAGCACACCAGTCCGACAAGTTGCAGGAAT 169607 Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || ||||| || || ||| || || ||||| ||| ||| | ||||| ||||| | Sbjct 169608 CTCTCGACGGGTTCATCAACAAATTCGTCCTGTGCAAGGACTGCAAGAACCCCGAGACTG 169667 Query 6487 A 6487 | Sbjct 169668 A 169668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946314169327