Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq188 140 2e-28
seq154 122 6e-23
seq87 120 2e-22
>seq188
Length=8484
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 7140 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 7081
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7080 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7046
>seq154
Length=71981
Score = 122 bits (134), Expect = 6e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
||||| || || || |||||||| ||||| ||||||||||| | | ||| |||| ||
Sbjct 41682 ACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCC 41623
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
||||| ||||||||||| || || ||||| ||||| | || | || || ||||||
Sbjct 41622 AATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGG 41563
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| || ||| ||||| | || ||| || || ||||| || || ||||| || ||
Sbjct 41562 ATCTTGGACTTTACATTGTCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTG 41503
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || | || |||||||| || ||||||
Sbjct 41502 CCGGTGAGTGTCTTCACGAAAATTTGCATG 41473
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
|||||||| ||||| || |||||||||||| |||| || |||| || | |||
Sbjct 41220 TGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGC 41161
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || || || || |||| || | || || || ||| |||||
Sbjct 41160 TTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTG 41101
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||| ||||| | || ||||| | ||||| || | || || || ||||| |||
Sbjct 41100 CTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTC 41041
Query 38295 AAGGTTTTCACGAATATCTGCATG 38318
|| || ||||| || |||||||||
Sbjct 41040 AATGTCTTCACAAAAATCTGCATG 41017
>seq87
Length=330109
Score = 120 bits (132), Expect = 2e-22
Identities = 207/301 (69%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
|||| || ||| | |||||||||||||| ||| |||| | ||||| | || || |
Sbjct 169368 ATGTCGCCGACCCCTTCTACCGCTACAAGATGGAGCGCCTTCAGTCCAAGATTGAAGGCA 169427
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGAC 6306
|||| || ||||| |||||||| ||| ||| |||| || || || | || | ||
Sbjct 169428 AGGGCAATGGTATCAAAACCGTTGTTGCCAATTTGCCGTCTGTTGCCCAGTCTCTGGCAC 169487
Query 6307 GCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTG 6366
| ||| | ||||| | ||||||||||| | |||||| || |||||||| |
Sbjct 169488 GTCCTCCAGCCTACATCATCAAATATTTCGGCTTCGAACTCGGTGCTCAGACCAACACCA 169547
Query 6367 ATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACT 6426
||| ||| | || || | ||| | |||||| | || | || | |||| ||||||| |
Sbjct 169548 ATCCCAAGGATGATCGATGGATCATCAACGGAGCACACCAGTCCGACAAGTTGCAGGAAT 169607
Query 6427 TACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
|| ||||| || || ||| || || ||||| ||| ||| | ||||| ||||| |
Sbjct 169608 CTCTCGACGGGTTCATCAACAAATTCGTCCTGTGCAAGGACTGCAAGAACCCCGAGACTG 169667
Query 6487 A 6487
|
Sbjct 169668 A 169668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946314169327
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |