Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq123 208 1e-48 >seq123 Length=109856 Score = 208 bits (230), Expect = 1e-48 Identities = 1299/2064 (63%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || || || || || | | || || ||||||||||| || || || ||| Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | |||| || || |||||| || | ||| | || || | | Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || |||| || || ||||| |||||||| || | || || ||||| | || Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || || | || | || ||||| | ||| || || | | || || || ||||| | Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966 Query 62090 TTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 |||| || |||||||| || || || || || || || || ||||| || | || | Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | || | | || | || || ||||| || || |||||||| || Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | || || | || | ||| || || ||||| || || | | |||||||| ||| Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 || || || | || || || |||||||| ||||| || | | | ||||| || ||| Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726 Query 62327 TA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 62385 || || | || || |||| | | ||||| | |||||| || | ||| | Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667 Query 62386 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 62445 ||||| ||| | | | ||| || |||| || |||||||| Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607 Query 62446 TCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502 || ||||||| || || ||||| || | || ||| || || || || Sbjct 48606 ACCAAGTTCCTTCGCA---AGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550 Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG-AA 62561 ||| || | | || || | | ||||| | ||| || || | | |||| | || Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491 Query 62562 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62621 || || || || | ||||||||||||| ||| || |||| ||||| || | Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTC 48432 Query 62622 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62680 |||| ||||| || | || || || || || || || || || || || || | Sbjct 48431 TTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTC 48372 Query 62681 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------AC- 62733 || || | || || || | |||| | ||| ||| || | || || | | || Sbjct 48371 ATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACG 48312 Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793 ||| ||| ||| |||||||| |||| ||| || ||||| ||||| | || | | || Sbjct 48311 AAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTA 48253 Query 62794 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 62853 | || || || ||||| | || |||||||||| || || || | |||||||| Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193 Query 62854 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913 ||| |||| || || ||||| || || |||||||| | ||||| ||| |||| | || Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133 Query 62914 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT--CTT--TTCT 62968 | || || | ||| | | || | ||||| ||| | | | || ||| |||| Sbjct 48132 CAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCT 48074 Query 62969 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCA 63025 | | | | | | ||| |||||||| || || | || ||| | || Sbjct 48073 CATACTTCTCGA----ACAGAGCCTCGAACTCCTCACCGTAG-CA--GTCAGATAAACCT 48021 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 ||| ||| | || || | | | ||| ||||||| | || || || ||||| || Sbjct 48020 GGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAAC 47961 Query 63086 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145 ||||| ||| |||| ||||| ||| | ||| | | | | ||| || ||||| Sbjct 47960 AGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGG 47901 Query 63146 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63205 ||||| || | || || | | | ||| | ||||| || || | ||| | ||| Sbjct 47900 TTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841 Query 63206 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265 | | ||||| | ||||| || ||||| || | ||||| ||| || || | | | ||| Sbjct 47840 AAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACT 47781 Query 63266 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTG 63325 | | ||| || | || || || ||||| || || || |||| ||||||| ||| | Sbjct 47780 CGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTC 47721 Query 63326 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 || ||||| || | | || || || || || | || ||||| | ||||| Sbjct 47720 GCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAG 47661 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 |||| |||||| ||||| ||||| || || ||| |||||| | | ||||| Sbjct 47660 GTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACAT 47601 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 |||||||| | || || ||||| || | ||| || |||||||| || ||| Sbjct 47600 GATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAAC 47541 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | || | |||||||| |||||||| | || ||||| | |||||| Sbjct 47540 ATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATG 47481 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--CTTGTTGTTTATTT 63623 || || | || ||||| | ||||||||| |||||||| | || ||| |||| || | Sbjct 47480 CCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATAT 47424 Query 63624 TCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682 | | ||| || ||| |||||| || || || |||||||||||||| ||| ||||| Sbjct 47423 TTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGG 47364 Query 63683 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 63742 ||||| | ||| | |||||||| | || | | | || ||| ||| | Sbjct 47363 TCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTC 47305 Query 63743 CTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 63801 ||| || || || || | || | ||||| || ||||||||||||||| | | || Sbjct 47304 CTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGT 47245 Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861 || ||| | || | || || || | ||||| ||||| || || || || | || Sbjct 47244 GATGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGC 47185 Query 63862 GGCTAGAATGGCATAATCCGGATG 63885 || || ||||| ||||| ||||| Sbjct 47184 AGCGAGGATGGCGTAATCTGGATG 47161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630281273200