Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq123 208 1e-48
>seq123
Length=109856
Score = 208 bits (230), Expect = 1e-48
Identities = 1299/2064 (63%), Gaps = 47/2064 (2%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||| || || || || || | | || || ||||||||||| || || || |||
Sbjct 49205 GTGAATTGGATTGGCGCAGAAGCAGCCATGGTTCGAAGATAGTACATGCCAGTCTTGAGA 49146
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| || || |||||| || | ||| | || || | |
Sbjct 49145 CCCATTTTCCAGCCAGCGAAGTGCATAGAAGTGATCTTGCCCATGGTTGGTTCCTTCAGA 49086
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || |||| || || ||||| |||||||| || | || || ||||| | ||
Sbjct 49085 TGAATGTTCAACGACTGTGACTGATCAATGAAGGCACCTCGATCAGCGGCCATCTGGATG 49026
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || | || | || ||||| | ||| || || | | || || || ||||| |
Sbjct 49025 ATAGTTCTCTGAGAGATCTCCCAGACAGTCTTGTAGAGTGCTTTGATGTCGGTTGGAATG 48966
Query 62090 TTTG-TA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|||| || |||||||| || || || || || || || || ||||| || | || |
Sbjct 48965 TTTGGTACGTTCTGAATTGAACCGCCCTCGGCAATGATTCTGTTCTTCATGTTGTCCGAC 48906
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|| | || | | || | || || ||||| || || |||||||| ||
Sbjct 48905 CACAGGCCAAGATCAACGAGATCTTTGAGCAGCCATGGATTGACGACCTGAAATTCGCCT 48846
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| || || | || | ||| || || ||||| || || | | |||||||| |||
Sbjct 48845 GCTAACACACGACGGGAGTAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCC 48786
Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326
|| || || | || || || |||||||| ||||| || | | | ||||| || |||
Sbjct 48785 AATATCTGCGACGTAGAGGCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCA 48726
Query 62327 TA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 62385
|| || | || || |||| | | ||||| | |||||| || | ||| |
Sbjct 48725 TACTGAGCA-ATCTTGGCTTTCAAGGCCTCCCAGTCCCAAAGGTCTGTTGGTGTCAGACC 48667
Query 62386 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGG 62445
||||| ||| | | | ||| || |||| || ||||||||
Sbjct 48666 CCAGAGGTCGTACTGTAGCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGG 48607
Query 62446 TCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTC 62502
|| ||||||| || || ||||| || | || ||| || || || ||
Sbjct 48606 ACCAAGTTCCTTCGCA---AGGTCACATGAAGCTGTCAGAGCTGCGTGGTAGATAGTCTC 48550
Query 62503 GAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG-AA 62561
||| || | | || || | | ||||| | ||| || || | | |||| | ||
Sbjct 48549 GAATATTTGAATGTTGAGCTGTCTTGCTTCGGGAGAATCGAACGGC-AGTCTAAGGGCAA 48491
Query 62562 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62621
|| || || || | ||||||||||||| ||| || |||| ||||| || |
Sbjct 48490 GGAAAGCATCAGCAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTT-GCTC 48432
Query 62622 TTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACA 62680
|||| ||||| || | || || || || || || || || || || || || |
Sbjct 48431 TTTCTCGCTTCCGGGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTC 48372
Query 62681 ATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------AC- 62733
|| || | || || || | |||| | ||| ||| || | || || | | ||
Sbjct 48371 ATGACCTGGATGACCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACTTGGTCAACG 48312
Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793
||| ||| ||| |||||||| |||| ||| || ||||| ||||| | || | | ||
Sbjct 48311 AAAGATGG-CAAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTA 48253
Query 62794 TTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACT 62853
| || || || ||||| | || |||||||||| || || || | ||||||||
Sbjct 48252 CTCAATGATTTCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACT 48193
Query 62854 CTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTC 62913
||| |||| || || ||||| || || |||||||| | ||||| ||| |||| | ||
Sbjct 48192 TTTTCTGTTGCAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTC 48133
Query 62914 TATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT--CTT--TTCT 62968
| || || | ||| | | || | ||||| ||| | | | || ||| ||||
Sbjct 48132 CAAGATGGCATACCACAACTTCT-GTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCT 48074
Query 62969 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCA 63025
| | | | | | ||| |||||||| || || | || ||| | ||
Sbjct 48073 CATACTTCTCGA----ACAGAGCCTCGAACTCCTCACCGTAG-CA--GTCAGATAAACCT 48021
Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085
||| ||| | || || | | | ||| ||||||| | || || || ||||| ||
Sbjct 48020 GGAGCTTCGTTGGGGCAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAAC 47961
Query 63086 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTA 63145
||||| ||| |||| ||||| ||| | ||| | | | | ||| || |||||
Sbjct 47960 AGATCTGGAGTCCAGAGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGG 47901
Query 63146 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 63205
||||| || | || || | | | ||| | ||||| || || | ||| | |||
Sbjct 47900 TTCTTCCGGAGGTTCAGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCA 47841
Query 63206 ATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265
| | ||||| | ||||| || ||||| || | ||||| ||| || || | | | |||
Sbjct 47840 AAGGCACCAGGTCTCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACT 47781
Query 63266 CTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTG 63325
| | ||| || | || || || ||||| || || || |||| ||||||| ||| |
Sbjct 47780 CGGAGCATAGGGACAAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTC 47721
Query 63326 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385
|| ||||| || | | || || || || || | || ||||| | |||||
Sbjct 47720 GCTCGAATTTTGTGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAG 47661
Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445
|||| |||||| ||||| ||||| || || ||| |||||| | | |||||
Sbjct 47660 GTCTTTAGCGTATCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACAT 47601
Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|||||||| | || || ||||| || | ||| || |||||||| || |||
Sbjct 47600 GATGACATTTGAGCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAAC 47541
Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565
|| | || | |||||||| |||||||| | || ||||| | ||||||
Sbjct 47540 ATCTTCTGGGACATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATG 47481
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT--CTTGTTGTTTATTT 63623
|| || | || ||||| | ||||||||| |||||||| | || ||| |||| || |
Sbjct 47480 CCAACAGACACGCGCATCAGCATGTGCTGTGGTCTTTC--CCATGGCTTCTTGTC-ATAT 47424
Query 63624 TCAACAAG-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682
| | ||| || ||| |||||| || || || |||||||||||||| ||| |||||
Sbjct 47423 TTGAGAAGATATGATCTTTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCTCGG 47364
Query 63683 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATA 63742
||||| | ||| | |||||||| | || | | | || ||| ||| |
Sbjct 47363 TCGTATACAATGGCAGAGTTGAGCTCGTCGGCGTGCCTCATCAC-ACAGTCATAAGTCTC 47305
Query 63743 CTT-GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 63801
||| || || || || | || | ||||| || ||||||||||||||| | | ||
Sbjct 47304 CTTGGAGATCATCGGCGAGTGCCTTCCATTCTTGGGATTGACATAGTTGTAGAGGTCTGT 47245
Query 63802 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 63861
|| ||| | || | || || || | ||||| ||||| || || || || | ||
Sbjct 47244 GATGACTGCCGAGAACTGCTTCTTCGTCTGCTTGTGAAGATTCGAGACTGCGATGCGGGC 47185
Query 63862 GGCTAGAATGGCATAATCCGGATG 63885
|| || ||||| ||||| |||||
Sbjct 47184 AGCGAGGATGGCGTAATCTGGATG 47161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633630281273200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |