Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq154 116 3e-21
>seq154
Length=71981
Score = 116 bits (128), Expect = 3e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||| ||||| | ||||| |||| || ||||| ||
Sbjct 41018 ATGCAGATTTTTGTGAAGACATTGACTGGTAAGACAATCACTCTCGAGGTTGAGTCTTCC 41077
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| || || ||| |||||| || || || || ||||| || ||||
Sbjct 41078 GATACCATCGA--CAATGTCAAGAGCAAAATCCAGGATAAGGAGGGTATTCCTCCCGACC 41135
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||| || || ||| | ||||| | || ||| || | |||||||
Sbjct 41136 AGCAGCGACTCATCTTTGCTGGTAAGCAACTGGAAGACGGCCGAACTTTGAGTGATTACA 41195
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| || || ||||| || || || |||| |||
Sbjct 41196 ATATCCAGAAGGAATCGACTCTTCACCTAGTTCTA 41230
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | ||||| || | || || | || || ||| |||
Sbjct 41474 ATGCAAATTTTCGTGAAGACACTCACCGGCAAGACAATTACCTTGGAGGTTGAGAGCTCT 41533
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||||||||| || || ||| || ||| ||||| || || ||||| || || |
Sbjct 41534 GACACTATCGA--CAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATTCCGCCGGATC 41591
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || || | || |||||||| || ||||| || || | ||| ||| | |||||||
Sbjct 41592 AGCAACGACTGATCTTTGCCGGAAAGCAATTGGAGGACGGTCGTACTCTTTCTGATTACA 41651
Query 25177 ATATTCAAAAAGA 25189
| ||||| || ||
Sbjct 41652 ACATTCAGAAGGA 41664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433326853982855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |