Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq85 174 2e-38 >seq85 Length=245923 Score = 174 bits (192), Expect = 2e-38 Identities = 370/549 (67%), Gaps = 9/549 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||||||||||||||| || | || ||||| || || || | || ||| ||| || | Sbjct 84441 GCACGCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAG 84500 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || ||||| ||||||||||| || || || || || || || || || Sbjct 84501 GCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAA 84560 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT-TACTGC 93269 ||||||||||| || ||||| || || | ||| | |||||| | ||| | | | Sbjct 84561 GATACCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAA---GGTGGACTCTCGATC 84617 Query 93270 TG--ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 || ||||| | |||||| || ||||| || |||| ||||| | ||| ||||| || Sbjct 84618 TGAAATCCAGCGGAGAGCCCATTCAGCTTTCTTTCTAATGCAAGGAATTGTATCGATGGC 84677 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||||| | || | | | ||| |||||||| || || | || || || Sbjct 84678 GTCGAAGAGGTATTGTCTTTGCTTTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTA 84737 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||| |||| || ||||| || ||||| || || || || | ||||| | Sbjct 84738 CATTTCGCTGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAGCAGCGGGCTTCGGG 84797 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || || ||||| || || | ||| || || || || ||||| || || || || || Sbjct 84798 GACTTGGACTTCGCCGGAGAAGCGCTCGACAAGGTTCTCGTTGACGATGCCGTCCGAGGC 84857 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATC 93564 || || ||||| | | || | || | || ||||| || ||||| | Sbjct 84858 GGCGAAGAAAGCGAGGACGTGGGAAACGAAGTAACGTTCGTCATCGTTGAGCTTGTGGTG 84917 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| |||||||| || || |||||||||||| | ||||| || || ||||| || Sbjct 84918 CCAGTCGTGGAGATCTTTCGACAGGTCGACTTCTTCGGCGGTCCAGAAGGAGGCTTCGGC 84977 Query 93625 TTTTTTGTA 93633 ||| ||||| Sbjct 84978 TTTCTTGTA 84986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859289515080