Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq54 109 1e-18 >seq54 Length=415426 Score = 109 bits (120), Expect = 1e-18 Identities = 172/245 (70%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || || |||| ||||| |||||||||||||| || | | | ||||| | | Sbjct 89730 AGTCGGCTCGTTGTCTGGTGGCTGGAAGATGAAGCTTGCATTGGCAAGAGCCATGTTGAT 89671 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | | || |||||| | |||||||||||||| || |||||| |||| | || || || Sbjct 89670 GAGAGCGGATGTCTTCCTGCTTGATGAGCCGACTAACCACTTGGATGTTGCGAATGTCGC 89611 Query 279815 CTGGCTAGTGTCCTACCTAA----CCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 ||||| | | |||||||| || ||||| | | ||| | || || |||| Sbjct 89610 TTGGCTCGAGAACTACCTAAAAACGCATACTGAA----ATCACATCCTTGATCGTGTCTC 89555 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 ||||||| |||||||| || ||||||| | | ||| | ||||||||||| || || Sbjct 89554 ACGACTCCGGCTTCCTCGACAACGTGTGCACAGATATCCTGCACTATGAGCAGAA---GA 89498 Query 279931 AGCTC 279935 ||||| Sbjct 89497 AGCTC 89493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833942292497