Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq154 150 3e-31 seq43 102 2e-16 >seq154 Length=71981 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || ||||| || ||||| || ||| Sbjct 41016 CCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCTC 40957 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | |||||| || ||||| || || | ||| ||||| || ||| Sbjct 40956 AAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGGA 40897 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| |||||| ||||| ||||| ||||| || Sbjct 40896 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACATTGTCGATCGTGTCACTGGATTCGACC 40837 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || || ||||||||||| ||||||||| || Sbjct 40836 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATTTTG 40786 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || |||||||| || ||||| ||||| || | || | ||||| || | ||| Sbjct 41449 GTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGACAAGGTTCGACCATCCTCCAGCTG 41390 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 || || ||||| || | | || ||||| |||||||| |||||||||||||| || || Sbjct 41389 TTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGGATTTT 41330 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 | ||| ||| |||||||| || | |||||| ||||| | || |||||||| || || Sbjct 41329 CGACTTAACGTTATCGATGGTATCAGATGATTCCACTTCGAGTGTTATGGTTTTGCCTGT 41270 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||| || ||||| || || ||||| Sbjct 41269 GAGAGTTTTGACAAAAATTTGCAT 41246 >seq43 Length=153456 Score = 102 bits (112), Expect = 2e-16 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 |||||||||| | |||||| ||||||||||||| ||||| || || | |||||||| Sbjct 109341 CTTGAATCTTGGACTTGACATTGTCGATGGTGTCTGAGGATTCGACCTCGAGGGTGATGG 109282 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||||||||| ||||| |||||||| Sbjct 109281 TTTTACCCGTGAGGGTCTTTACGAAGATCTGCAT 109248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619900099240