Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq85 322 9e-83
seq123 168 1e-36
>seq85
Length=245923
Score = 322 bits (356), Expect = 9e-83
Identities = 520/733 (71%), Gaps = 25/733 (3%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| || |||||||||||||| |||||||| ||||| |||||||| | | | |||
Sbjct 84872 CTCGCTTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCC 84813
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| || || | || || |||||||| || ||||||||||| || || |||
Sbjct 84812 GGCGAAGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAAC 84753
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599
| ||| || ||||| | ||| |||| |||| ||||| || || |
Sbjct 84752 ATCCACAGCGAAATGTACTC---ACTTCTCATTGACACATACATTAAAGAGCCAAAGCAA 84696
Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659
| | || ||| | ||||| || || || || ||||| | ||||| || || |||
Sbjct 84695 AGACAATACCTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGG 84636
Query 42660 GCGCTCAACTGGATCG-AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718
|| ||| |||||| ||| || || | || || | | || | ||||| |||||| |
Sbjct 84635 GCTCTCCGCTGGATTTCAGA-TCGAGAGTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGC 84577
Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777
||| || || || ||||||||||| ||| |||||||||||||||||||||||||| ||
Sbjct 84576 CGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCG 84517
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
|||| || |||||||| || |||||||| |||||||| ||| | |||||||||| |||
Sbjct 84516 AGGTCTC-ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGC 84458
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | |||||||| ||||| ||| ||||| ||||| | ||| ||||| ||||| |
Sbjct 84457 ACACCGACTTTGCGTGCCTGCTGCTCTCG---CACCTTAACCACCGCCCCTCAAAGGAAC 84401
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957
||| |||||||||| |||||||| |||||||| | || |||||||| || |||
Sbjct 84400 TTATCCAGGCCATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGC 84341
Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017
| ||||| | || | ||||||||| | |||||| ||||||| ||| ||| |
Sbjct 84340 TCCCCGTTGCTCTACTGGGCATGAACTCGAAGCTCATGAAGCAGTACATTGAGTTCGTTG 84281
Query 43018 CCGACCATCTCCTGTGCCAG-ATGGGTCTCAGCCG--CCTCTACAA---CACGCCGTGCC 43071
|||||| || || | || ||||| | | ||| |||||| ||| | | |
Sbjct 84280 CCGACCGGCTGTTG-GTAAGTATGGG--TAACCCGAAGTACTACAAGGTCAC-CAAT--C 84227
Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131
| || |||||||||||||||||||| | | |||||||||||| || ||||||||||| |
Sbjct 84226 CGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAG 84167
Query 43132 TCGCCGACTACCA 43144
| | ||||||||
Sbjct 84166 TGGGTGACTACCA 84154
>seq123
Length=109856
Score = 168 bits (186), Expect = 1e-36
Identities = 487/741 (66%), Gaps = 14/741 (2%)
Strand=Plus/Minus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747
|||| ||||||||||| ||||| || | | |||||||| | || || ||||| | |
Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231
Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807
|| | ||||||||||||||| || || ||||| || ||||||||||||||||
Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171
Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867
||||||||||| || || ||||| |||||| | | || | | ||| | | |
Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTC 48111
Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
||||||| ||| || |||| | ||| | ||| || | |||| |||||
Sbjct 48110 TGTGCCTTGATTGTCTGTCG-GCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTC 48052
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG-GCA-CGACGCCGGGCACATGAGACTC 244984
|||||| || || || || || || || || | ||||| | |||| ||
Sbjct 48051 GAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTG--GGGCAGAAGAGAGTC 47994
Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044
|| || ||| | || |||| || |||||| || || || ||||||| || | ||
Sbjct 47993 CAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAAC 47934
Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104
| || | | | || ||| || |||||||| || | || | ||||||
Sbjct 47933 AAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAG 47874
Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164
|| ||| ||||||||||||| | ||| || || | ||| || || | ||||||||| |||
Sbjct 47873 ACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCC 47814
Query 245165 TGGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTT 245220
||||| | | | |||||| | ||| |||| || || |||| || | ||||||
Sbjct 47813 TGGTCGA----CGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758
Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280
|| |||||| ||||| ||| |||| ||| | | | | ||| || | ||
Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698
Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340
|| | |||||||| | ||| ||||| | ||||||| |||| | || || || ||
Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638
Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400
||| || |||| |||||||| || || || || || |||| || | || || |
Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGT 47578
Query 245401 GCACGAGTTGAACAGAGTGGG 245421
|| | ||||| || |||||
Sbjct 47577 GCCTGCATTGAAGAGGGTGGG 47557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944336638479920
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