Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq85 322 9e-83 seq123 168 1e-36 >seq85 Length=245923 Score = 322 bits (356), Expect = 9e-83 Identities = 520/733 (71%), Gaps = 25/733 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| |||||||| ||||| |||||||| | | | ||| Sbjct 84872 CTCGCTTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTTGTCGAGCGCTTCTCC 84813 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || || | || || |||||||| || ||||||||||| || || ||| Sbjct 84812 GGCGAAGTCCAAGTCCCCGAAGCCCGCTGCTTTTATGGCTTCCAGATCATGATGGAAAAC 84753 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAG 42599 | ||| || ||||| | ||| |||| |||| ||||| || || | Sbjct 84752 ATCCACAGCGAAATGTACTC---ACTTCTCATTGACACATACATTAAAGAGCCAAAGCAA 84696 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | || ||| | ||||| || || || || ||||| | ||||| || || ||| Sbjct 84695 AGACAATACCTCTTCGACGCCATCGATACAATTCCTTGCATTAGAAAGAAAGCTGAATGG 84636 Query 42660 GCGCTCAACTGGATCG-AGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 || ||| |||||| ||| || || | || || | | || | ||||| |||||| | Sbjct 84635 GCTCTCCGCTGGATTTCAGA-TCGAGAGTCCACCTTTGCCCAGCGTCTGGTCGCCTTTGC 84577 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 ||| || || || ||||||||||| ||| |||||||||||||||||||||||||| || Sbjct 84576 CGCTGTGGAAGGTATCTTCTTCTCCGGCTCCTTCGCCTCCATCTTCTGGCTCAAGAAGCG 84517 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 |||| || |||||||| || |||||||| |||||||| ||| | |||||||||| ||| Sbjct 84516 AGGTCTC-ATGCCCGGCCTTACCTTCTCCAACGAACTTATCTCCCGGGACGAGGGCATGC 84458 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | |||||||| ||||| ||| ||||| ||||| | ||| ||||| ||||| | Sbjct 84457 ACACCGACTTTGCGTGCCTGCTGCTCTCG---CACCTTAACCACCGCCCCTCAAAGGAAC 84401 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 ||| |||||||||| |||||||| |||||||| | || |||||||| || ||| Sbjct 84400 TTATCCAGGCCATCATCGTCGAGGCCGTCCAGATCGAGCAAGAATTCCTCACCGAGGCGC 84341 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 | ||||| | || | ||||||||| | |||||| ||||||| ||| ||| | Sbjct 84340 TCCCCGTTGCTCTACTGGGCATGAACTCGAAGCTCATGAAGCAGTACATTGAGTTCGTTG 84281 Query 43018 CCGACCATCTCCTGTGCCAG-ATGGGTCTCAGCCG--CCTCTACAA---CACGCCGTGCC 43071 |||||| || || | || ||||| | | ||| |||||| ||| | | | Sbjct 84280 CCGACCGGCTGTTG-GTAAGTATGGG--TAACCCGAAGTACTACAAGGTCAC-CAAT--C 84227 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | || |||||||||||||||||||| | | |||||||||||| || ||||||||||| | Sbjct 84226 CGTTTGACTTTATGGAGAACATCTCTCTAGCGGGCAAGACCAATTTCTTCGAGAAGCGAG 84167 Query 43132 TCGCCGACTACCA 43144 | | |||||||| Sbjct 84166 TGGGTGACTACCA 84154 >seq123 Length=109856 Score = 168 bits (186), Expect = 1e-36 Identities = 487/741 (66%), Gaps = 14/741 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||||||||||| ||||| || | | |||||||| | || || ||||| | | Sbjct 48290 GCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCTGTGCACAAG 48231 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || | ||||||||||||||| || || ||||| || |||||||||||||||| Sbjct 48230 TTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAGGCGTCCTTG 48171 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 ||||||||||| || || ||||| |||||| | | || | | ||| | | | Sbjct 48170 TAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATACCACAACTTC 48111 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 ||||||| ||| || |||| | ||| | ||| || | |||| ||||| Sbjct 48110 TGTGCCTTGATTGTCTGTCG-GCCTCGGCCTTCCTTCTCATACTTCTCGAACAGAGCCTC 48052 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG-GCA-CGACGCCGGGCACATGAGACTC 244984 |||||| || || || || || || || || | ||||| | |||| || Sbjct 48051 GAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTG--GGGCAGAAGAGAGTC 47994 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || || ||| | || |||| || |||||| || || || ||||||| || | || Sbjct 47993 CAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGAGCGTAAAAC 47934 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 | || | | | || ||| || |||||||| || | || | |||||| Sbjct 47933 AAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTCAGCCACTCAAAG 47874 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || ||| ||||||||||||| | ||| || || | ||| || || | ||||||||| ||| Sbjct 47873 ACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTCTTGTTGCCGCCC 47814 Query 245165 TGGTCCACCATCCTCTCGAGC-GCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTT 245220 ||||| | | | |||||| | ||| |||| || || |||| || | |||||| Sbjct 47813 TGGTCGA----CGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACAAGGCCGTT 47758 Query 245221 AGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT 245280 || |||||| ||||| ||| |||| ||| | | | | ||| || | || Sbjct 47757 TGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGGACGTTCAA 47698 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCC 245340 || | |||||||| | ||| ||||| | ||||||| |||| | || || || || Sbjct 47697 TCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCGTAGATTCC 47638 Query 245341 CTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCT 245400 ||| || |||| |||||||| || || || || || |||| || | || || | Sbjct 47637 CTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCATTTGGTGT 47578 Query 245401 GCACGAGTTGAACAGAGTGGG 245421 || | ||||| || ||||| Sbjct 47577 GCCTGCATTGAAGAGGGTGGG 47557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336638479920