Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq154 96.9 3e-15 >seq154 Length=71981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| || || || ||||||||||||||||||||||| | || || || Sbjct 41691 AGTCGGAGAACCAAGTGCAGTGTACTCTCCTTCTGAATGTTGTAATCAGA-AAGAGTACG 41633 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||||||||| |||||||| ||||| || ||||||||| ||| | | ||| Sbjct 41632 ACCGTCCTCCAATTGCTTTCCGGCAAAGATCAGTCGTTGCTGATCCGGCGGAATACCCTC 41573 Query 34029 TTTGTCC 34035 |||||| Sbjct 41572 CTTGTCC 41566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| || | |||||| || || || || ||| ||||||||||||||||||| | Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| || ||||| || || |||| |||||||| || || Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | || ||||| ||||| ||||| | | | |||||| ||||| | Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061349894034