Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq154 109 1e-18 >seq154 Length=71981 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || |||||| | ||||| |||||||| | || || || ||||| Sbjct 40981 TTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAA 40922 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400 |||||||| || || | || || || || || || || || || ||| || || | Sbjct 40921 AATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTT-GCTCTTGACAT 40863 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || ||||| || || || ||||| ||||| || ||||||||||||| Sbjct 40862 TGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGA 40803 Query 288461 CGAATATCTGCATTATG 288477 |||| ||||||||| || Sbjct 40802 CGAAGATCTGCATTTTG 40786 Score = 104 bits (114), Expect = 6e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || |||| || || || |||| || ||| || |||||||| || | Sbjct 41248 CATG-CCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAAT 41190 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || |||||||| | ||| || || || ||||| || ||||| || Sbjct 41189 CACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGG 41130 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 || || || || |||||||||||||| ||| || || || || || | |||| || Sbjct 41129 GAGGAATACCCTCCTTATCCTGGATTTT-GCTCTTGACATTGTCGATGGTATCGGAAGAC 41071 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || |||| ||||| || || |||||||| Sbjct 41070 TCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 100 bits (110), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || | ||| || || || || | || ||||| || || || || | Sbjct 41476 CATG-CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAAT 41418 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | || || || || || | ||||| ||||||||||||| ||||| || Sbjct 41417 CTGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTG 41358 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||| || ||||| || || |||||||||| || ||||| || || | ||| |||| Sbjct 41357 GTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATT 41298 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||||||| || || || || || || ||||| ||||| || || ||||| Sbjct 41297 CCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651120192126