Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq154 109 1e-18
>seq154
Length=71981
Score = 109 bits (120), Expect = 1e-18
Identities = 144/197 (73%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || || |||||| | ||||| |||||||| | || || || |||||
Sbjct 40981 TTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAA 40922
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400
|||||||| || || | || || || || || || || || || ||| || || |
Sbjct 40921 AATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTT-GCTCTTGACAT 40863
Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460
| || || | || || ||||| || || || ||||| ||||| || |||||||||||||
Sbjct 40862 TGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGA 40803
Query 288461 CGAATATCTGCATTATG 288477
|||| ||||||||| ||
Sbjct 40802 CGAAGATCTGCATTTTG 40786
Score = 104 bits (114), Expect = 6e-17
Identities = 165/233 (71%), Gaps = 3/233 (1%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || |||| || || || |||| || ||| || |||||||| || |
Sbjct 41248 CATG-CCACCACGAAGTCGTAGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAAT 41190
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | || || |||||||| | ||| || || || ||||| || ||||| ||
Sbjct 41189 CACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGG 41130
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420
|| || || || |||||||||||||| ||| || || || || || | |||| ||
Sbjct 41129 GAGGAATACCCTCCTTATCCTGGATTTT-GCTCTTGACATTGTCGATGGTATCGGAAGAC 41071
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 41070 TCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018
Score = 100 bits (110), Expect = 7e-16
Identities = 162/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || | ||| || || || || | || ||||| || || || || |
Sbjct 41476 CATG-CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAAT 41418
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | | || || || || || | ||||| ||||||||||||| ||||| ||
Sbjct 41417 CTGACAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTG 41358
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||| || ||||| || || |||||||||| || ||||| || || | ||| ||||
Sbjct 41357 GTGGAATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATT 41298
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| |||||||| || || || || || || ||||| ||||| || || |||||
Sbjct 41297 CCACTTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179651120192126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |