Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq123 233 2e-56 seq85 113 5e-20 >seq123 Length=109856 Score = 233 bits (258), Expect = 2e-56 Identities = 909/1407 (65%), Gaps = 45/1407 (3%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| || |||||||| ||||| ||||| || ||||| || || | || ||| Sbjct 48827 TAGATGTTGGATGTATATGGCTCGAAGCATTCATTATTGCCCAATATCTGCGACGTAGAG 48768 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || ||||||||||| | ||||| || || | ||| | | ||| | Sbjct 48767 GCGGTCGGCATGGGTGCGACAAGAAGAGAATTTCGAACACCATACTGAGCAATCTTGGCT 48708 Query 114062 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || | ||| |||||||| | | | | || || || | ||| | || |||| | Sbjct 48707 TTCAAGGCCTCCCAGTCCCAAAGGTCTG-TTGGTGTCAGACC-CCAGAGGTCGTACTGTA 48650 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 | |||||| || ||||| |||||| | || |||||||| || ||| ||| | Sbjct 48649 GCTGACCTTGAGAAATGGGCGAGCCCTCATAGGTTTCGTATGGACCAAGTTCCTTCGCAA 48590 Query 114180 ATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 || | |||| | || |||||||| || || ||||| || || || || Sbjct 48589 GGTCACATGAAGCTGTC----AGAGCTGCGTGGTAGATAGTCTCGAATATTTGAATGTTG 48534 Query 114236 AT-TGCCTTGGCCTCGTCGGAATCAAACGCGAGTC----GGCACAAAATAAATACATCCG 114290 | || |||| | ||| ||||| |||| |||| |||| | || |||| | Sbjct 48533 AGCTGTCTTG-CTTCGGGAGAATCGAACGGCAGTCTAAGGGCA----AGGAAAGCATCAG 48479 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | || ||||| ||||| || ||||| || || ||||| | || ||||| || | Sbjct 48478 CAAGGCCTTGAACACCAAGACCAATGGGTCGGTGTCTGAAGTTGCTCTTTCTCGCTTCCG 48419 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 ||||| || | || | ||||| | | | || || || || || | |||| ||| Sbjct 48418 GGACGGGGTAGTAGTTGATCTCGATGATCTTGTTCAGGTTCTTAGTCATGACCTGGATGA 48359 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAA----CTGCGAGTCTCTTCATTGACATACTTAGGA 114466 || || || | | ||| | || ||| | | ||| || | | || Sbjct 48358 CCTCGTGCAGTCGGCCAAAGTCATATTGACCTTCGACT-TGGTCAACGAAAGAT---GGC 48303 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 | || | || |||| ||| || || | | ||| || | |||||||| || ||| Sbjct 48302 AAAGCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATT 48243 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || ||||| || || ||| ||||||||||||||||| ||||| ||| |||| Sbjct 48242 TCTGTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTG 48183 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || || |||||||| |||||| |||| | || ||||| || |||| || | || || Sbjct 48182 CAGGCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCA 48123 Query 114647 TTCCA-GACATCGGCGGCTGGCACAGTGGC-GTTGG-CTCGCCCCTCCTCCTCGTACTTT 114703 | ||| || || | | || | | || | || || |||| || |||| ||| ||||| Sbjct 48122 TACCACAACTTCTGTGCCTTG---ATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTC 48066 Query 114704 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 114763 | | || || || ||||| ||||| | || || | ||||| || | | ||| Sbjct 48065 TCGAACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGG 48006 Query 114764 CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAG 114823 |||||||||| ||| | || | |||||| ||||||||||| || ||||| ||||| Sbjct 48005 CAGAAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAG 47946 Query 114824 AGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 114883 ||||| | || | ||| ||| ||| ||||||| | || || || || | | | Sbjct 47945 AGAGCGTAAAACAAATCACGAGCACGAACTTCTTCCTTTCCGTGGTTCTTCCGGAGGTTC 47886 Query 114884 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTT 114939 | | || | || ||| |||||||| || || ||||| || || | | ||| || Sbjct 47885 AGCCACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTC 47826 Query 114940 ACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 | | || |||||| || || | || || | ||| || || ||||| || | Sbjct 47825 TTGTTG-CCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGAC 47767 Query 115000 GATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCA 115057 | || | ||| ||| ||||| || ||| ||| ||| | | | |||| | | Sbjct 47766 AAGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCC--AGTCGCTCGAATTTTG 47709 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 |||| || || |||||||| || || ||||||||| ||||| | | || | Sbjct 47708 TGGACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTA 47649 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGT 115177 ||||||| || ||||||||||| |||| | |||| | ||| || |||||||| Sbjct 47648 TCGTAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGA 47589 Query 115178 GGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 115237 | ||||||| || || ||||||||||| || | ||||| ||||||| |||||| Sbjct 47588 GCATTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGAC 47529 Query 115238 ATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 115297 || || ||| ||||| | ||| || ||||| || ||||| || | || || Sbjct 47528 ATGAGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACG 47469 Query 115298 CGCATAAACATGTATTGGGGTGTTTCC 115324 ||||| | ||||| || ||| ||||| Sbjct 47468 CGCATCAGCATGTGCTGTGGTCTTTCC 47442 >seq85 Length=245923 Score = 113 bits (124), Expect = 5e-20 Identities = 216/312 (69%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | |||||||| |||||||| ||||| || |||||| || || Sbjct 84445 GCAAAGTCGGTGTGCATGCCCTCGTCCCGGGAGATAAGTTCGTTGGAGAAGGTAAGGCCG 84504 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||||||||| |||||||| | |||||| || | || || || ||||||||||| Sbjct 84505 GGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAGCCGGAGAAGAAGATA 84564 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---A 126223 || |||||| || || || | ||||||| ||||||| | |||| | || | Sbjct 84565 CCTTCCACAGCGGCAAAGGCGACCAGACGCTGGGCAAAGGTG---GACTCTCGATCTGAA 84621 Query 126224 AACCACTTCATCGCCCACTGCGCCTT-TTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 | ||| | ||||| | || || ||||| || || || | || | ||| || || Sbjct 84622 ATCCAGCGGAGAGCCCATTCAGCTTTCTTTCT-AATGCAAGGAATTGTATCGATGGCGTC 84680 Query 126283 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 126341 ||||| | | ||||| || ||| ||||| ||||| | || ||||| ||| || Sbjct 84681 GAAGAGGTATTGTCTTTGCT-TTGGCTCTTTAATGTATGTGTCAATGAGAAGTGAGTACA 84739 Query 126342 TTTCGCCGTGGA 126353 |||||| ||||| Sbjct 84740 TTTCGCTGTGGA 84751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597351979678360