Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq154 143 3e-29 >seq154 Length=71981 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||||||| ||||| || || | || || ||||| |||||||||||||||| Sbjct 41472 CCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGAC 41413 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | || || ||||| ||||| || | || | |||||||||||| || ||| Sbjct 41412 AAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGGA 41353 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||| || || | |||||| | |||||| Sbjct 41352 ATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCACT 41293 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| ||| ||||| || | |||||| || ||||||||||| Sbjct 41292 TCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCAT 41246 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||||||||| || | |||||| |||||||||||||||| || Sbjct 40986 GTTGATTCTTTCTGAATGTTGTAGTCGCTCAAGGTGCGACCGTCTTCAAGCTGCTTACCA 40927 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || || |||||||| |||||||| || || || ||||| || || ||| Sbjct 40926 GCGAAAATCAGACGTTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTG 40867 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| || || || || | || | ||||||||| |||| ||| Sbjct 40866 ACATTGTCGATCGTGTCACTGGATTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTC 40807 Query 64427 TTTACGAAAATTTGCATTTTAATAATGAT 64455 || ||||| || |||||||| || |||| Sbjct 40806 TTGACGAAGATCTGCATTTTGATGGTGAT 40778 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || ||||| |||| |||||||| || || || |||||||| | || || ||||| Sbjct 41229 AGAACTAGGTGAAGAGTCGATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCT 41170 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| | ||||| |||||||||||||||||||| || || || || Sbjct 41169 TCCAGTTGCTTACCAGCAAAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCC 41110 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | ||||| | || || || | ||| | ||| Sbjct 41109 TGGATTTTGCTCTTGACATTGTCGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTC 41050 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || || || ||||| ||||| Sbjct 41049 TTACCAGTCAATGTCTTCACAAAAATCTGCAT 41018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||||||||| | | || || |||| || | ||||| |||||| | Sbjct 41664 TCCTTCTGAATGTTGTAATCAGAAAGAGTACGACCGTCCTCCAATTGCTTTCCGGCAAAG 41605 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || || ||||| || || ||||| || || || || || || || ||||||| Sbjct 41604 ATCAGTCGTTGCTGATCCGGCGGAATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG 41545 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || ||| | || || || | || | ||||||||||| | || || ||| Sbjct 41544 TCGATAGTGTCAGAGCTCTCAACCTCCAAGGTAATTGTCTTGCCGGTGAGTGTCTTCACG 41485 Query 64433 AAAATTTGCAT 64443 ||||||||||| Sbjct 41484 AAAATTTGCAT 41474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643444713480