Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq123 170 2e-37 >seq123 Length=109856 Score = 170 bits (188), Expect = 2e-37 Identities = 320/468 (68%), Gaps = 2/468 (0%) Strand=Plus/Plus Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956 || ||||| ||||| || || || || | || ||||| || |||||| |||| ||| Sbjct 47557 CCCACCCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGAC 47616 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | |||| ||||| ||| ||||| | ||| | || ||| ||| || | ||||| Sbjct 47617 -ATGAAGGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTC 47675 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 ||| | || || || || || | | |||||| | | || || | || ||||| || Sbjct 47676 AAAGAATGCCGGCGGTATTGGATTGAACGTCCACAAAATTCGAGCGACTGGCTCCTATAT 47735 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 | || || || ||||| || |||||||| |||||||||||||| ||||| |||| | Sbjct 47736 CGCAGGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATAC 47795 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || || ||||| |||||||| || | ||| ||| | || || || || || || Sbjct 47796 TGCTCGATACGTCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGA 47855 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 |||||||||||| || || | | | |||| || ||||||||||| || || Sbjct 47856 GCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGA 47915 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 | | || | || | || |||||||||||| ||||| || || ||||| || || Sbjct 47916 AGTTCGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGT 47975 Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 ||||||||| | ||||| ||| || || ||||| ||| ||| || Sbjct 47976 TGAGAAAAACGGAGACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGG 48023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721858063320