Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202
012-11-26] 217 sequences; 28,364,325 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq123 170 2e-37
>seq123
Length=109856
Score = 170 bits (188), Expect = 2e-37
Identities = 320/468 (68%), Gaps = 2/468 (0%)
Strand=Plus/Plus
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956
|| ||||| ||||| || || || || | || ||||| || |||||| |||| |||
Sbjct 47557 CCCACCCTCTTCAATGCAGGCACACCAAATGCTCAAATGTCATCATGTTTCTTGATCGAC 47616
Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016
| |||| ||||| ||| ||||| | ||| | || ||| ||| || | |||||
Sbjct 47617 -ATGAAGGAGGACTCGATCGAGGGAATCTACGATACGCTAAAGACCTGCGCCATGATCTC 47675
Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076
||| | || || || || || | | |||||| | | || || | || ||||| ||
Sbjct 47676 AAAGAATGCCGGCGGTATTGGATTGAACGTCCACAAAATTCGAGCGACTGGCTCCTATAT 47735
Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136
| || || || ||||| || |||||||| |||||||||||||| ||||| |||| |
Sbjct 47736 CGCAGGCACAAACGGCACATCAAACGGCCTTGTCCCTATGCTCCGAGTCTTTGACAATAC 47795
Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196
|| || ||||| |||||||| || | ||| ||| | || || || || || ||
Sbjct 47796 TGCTCGATACGTCGACCAGGGCGGCAACAAGAGACCTGGTGCCTTTGCCGTTTACCTTGA 47855
Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256
|||||||||||| || || | | | |||| || ||||||||||| || ||
Sbjct 47856 GCCCTGGCACGCCGATGTCTTTGAGTGGCTGAACCTCCGGAAGAACCACGGAAAGGAAGA 47915
Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316
| | || | || | || |||||||||||| ||||| || || ||||| || ||
Sbjct 47916 AGTTCGTGCTCGTGATTTGTTTTACGCTCTCTGGACTCCAGATCTGTTCATGAAGCGGGT 47975
Query 94317 CGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364
||||||||| | ||||| ||| || || ||||| ||| ||| ||
Sbjct 47976 TGAGAAAAACGGAGACTGGACTCTCTTCTGCCCCAACGAAGCTCCAGG 48023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494721858063320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |