Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herpotrichiellaceae_20sp._20UM238_20[genbank_20GCA_5F000315175.1_202 012-11-26] 217 sequences; 28,364,325 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq123 178 1e-39 seq85 149 6e-31 seq154 116 4e-21 >seq123 Length=109856 Score = 178 bits (196), Expect = 1e-39 Identities = 610/940 (65%), Gaps = 17/940 (2%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| ||| |||| ||| |||||||| ||| || | | || |||||| | ||| || Sbjct 48299 GCAACAGAAGCCAAATTGCAGACGGCGACCTCGTCAGGGGCGGTGTACTCAATGATTTCT 48240 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | ||| | |||| | | || ||| |||||| || | |||||| ||||| | ||||| Sbjct 48239 GTGCACAAGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGATTACTTTTTCTGTTGCAG 48180 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 ||||| ||| |||||||| | || || ||||| || | || | ||| | || Sbjct 48179 GCGTCCTTGTAGAGCATGAATGGGTTTCCAGTCTCAGTCTGGGCCTCCAAGATGGCATAC 48120 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | || | ||| || | ||| || ||||| || |||| || |||| Sbjct 48119 CA---CAACTTCTGTGCCTTGATTGTCTGTCGGCCTCGGCCTTCCTTCTCATACTTCTCG 48063 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 |||| ||| ||||| || ||||||||||| | | || ||| | | || || Sbjct 48062 AACAGAGCCTCGAACTCCTCACCGTAGCAGTCAGATAAACCTGGAGCTTCGTTGGGGCAG 48003 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 | || | ||| ||| | || || |||||||||||| || |||||| Sbjct 48002 AAGAGAGTCCAGTCTCCGTTTTTCTCAACCCGCTTCATGAACAGATCTGGAGTCCAGAGA 47943 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGA--TTGA 154011 ||||| | | || || || | | | || | || || | | || | || || | Sbjct 47942 GCGTAAAACAAATCACGAGCAC-GAACTTCTTCCTTTCCGTGGTTC-TTCCGGAGGTTCA 47885 Query 154012 GCACGCT-ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 || | || | ||| |||||||||||||| |||| ||| ||||| | |||||| | | Sbjct 47884 GC-CACTCAAAGACATCGGCGTGCCAGGGCTCAAGGTAAACGGCAAAGGCACCAGGTCTC 47826 Query 154071 TTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || |||||||| ||||||| || | |||||| ||||| || | ||| || | Sbjct 47825 TTGTTGCCGCCCTGGTCGACGTATCGAGCAGTATTGTCAAAGACTCGGAGCATAGGGACA 47766 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 |||||| ||| |||||||| || ||| | | ||| || || | || || Sbjct 47765 AGGCCGTTTGATGTGCCGTTTGTGCCTGCGATATAGGAGCCAGTCGCTCGAATTTTGTGG 47706 Query 154188 ACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTG 154247 ||||| | ||||| |||||| | | |||||| || |||||| ||||| | Sbjct 47705 ACGTTCAATCCAATACCGCCGGCATTCTTTGAGATCATGGCGCAGGTCTTTAGCGTATCG 47646 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 ||||| || ||||| || || | | ||| ||||||||| || ||||||| | | Sbjct 47645 TAGATTCCCTCGATCGAGTCCTCCTTCATGTCGATCAAGAAACATGATGACATTTGAGCA 47586 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 | | || || || ||||||||||| ||||| || |||| || ||| ||| Sbjct 47585 TTTGGTGTGCCTGCATTGAAGAGGGTGGGCGAAGCGTGTGTGAACATCTTCTGGGACATG 47526 Query 154368 ATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGC 154427 | ||| || || ||| | | |||||||| || || |||||||| | | |||||| Sbjct 47525 AGATTGTATGTCTCAATGACCTTCTCGATATCTTCTCCATGAATGCCAACAGACACGCGC 47466 Query 154428 ATGAGCATGTGCTGCGGACGTT-CGGCGACTCTATTGTCAATCTTCAAGAGATATCCATT 154486 || ||||||||||| || | || | | || | |||||| || | |||||| | Sbjct 47465 ATCAGCATGTGCTGTGGTCTTTCCCATGGCT-TCTTGTCATATTTGAGAAGATATGATCT 47407 Query 154487 TTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCT 154526 ||| || || ||| | || ||||| ||||| | ||||||| Sbjct 47406 TTCCAGTGTCTTGAAGCCAAAATAGTTGTAGTTAAAATCT 47367 >seq85 Length=245923 Score = 149 bits (164), Expect = 6e-31 Identities = 307/455 (67%), Gaps = 5/455 (1%) Strand=Plus/Minus Query 52384 CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCA 52443 |||| | ||| |||| |||| ||||| ||| || || || | || || |||||| Sbjct 84607 CCACCTTTGCCCAGCGTCTGGTCGCCTTTGCCGCTGTGGAAGGTATCTTCTTCTCCGGCT 84548 Query 52444 GCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCA 52503 ||| ||| ||||||| | | || | | ||| | ||||||||||| || ||| || Sbjct 84547 CCTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTTACCTTCTCCA 84488 Query 52504 ACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAG 52562 |||| | || || || ||||| || ||||||| |||||||||||||| || || Sbjct 84487 ACGAACTTATCTCCCGGGACGAGGGCATGCACACCGACTTTGCGTGCCTGCTGCTCT--- 84431 Query 52563 ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTG 52622 ||| | | | | | ||| |||| | ||| || ||||| || Sbjct 84430 -CGCACCTTAACCACCGCCCCTCAAAGGAACTTATCCAGGCCATCATCGTCGAGGCCGTC 84372 Query 52623 GCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG 52682 ||||| | || || | || | ||||| || || | || |||||||||||| || Sbjct 84371 CAGATCGAGCAAGAATTCCTCACCGAGGCGCTCCCCGTTGCTCTACTGGGCATGAACTCG 84312 Query 52683 CAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG 52742 || |||| ||||||| ||||| || || || || |||||||| | || | Sbjct 84311 AAGCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGGCTGTTGGTAAGTATGGGTAAC 84252 Query 52743 CCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGC 52802 || ||||||| ||| | |||||||||||| |||||| | ||||| || || | |||| Sbjct 84251 CCGAAGTACTACAAGGTCACCAATCCGTTTGACTTTATGGAGAACATCTCTCTAGCGGGC 84192 Query 52803 AAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||| || |||||||||||||| || || || Sbjct 84191 AAGACCAATTTCTTCGAGAAGCGAGTGGGTGACTA 84157 >seq154 Length=71981 Score = 116 bits (128), Expect = 4e-21 Identities = 145/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| || |||| ||| || ||| || ||||| ||||| | | Sbjct 41211 GATTCCTTCTGGATATTGTAATCACTCAAAGTTCGGCCGTCTTCCAGTTGCTTACCAGCA 41152 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| ||||| ||||| || || || |||||| || | | Sbjct 41151 AAGATGAGTCGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTGGATTTTGCTCTTGACA 41092 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||| |||| ||||| ||||||| || | || |||||||||| || || Sbjct 41091 TTGT-CGATGGTATCGGAAGACTCAACCTCGAGAGTGATTGTCTTACCAGTCAATGTCTT 41033 Query 138600 TACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 41032 CACAAAAATCTGCATG 41017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || || || | | |||| || || ||||||||||||||||| Sbjct 41017 GCCGCCACGGAGACGGAGCACCAAGTGGAGGGTTGATTCTTTCTGAATGTTGTAGTCGCT 40958 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| || || || ||||| | | || ||||| || ||||| ||||| Sbjct 40957 CAAGGTGCGACCGTCTTCAAGCTGCTTACCAGCGAAAATCAGACGTTGCTGGTCAGGAGG 40898 Query 138507 TATACCTTCTTTGTCGGTGATTTTT--TGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||||| | || || Sbjct 40897 AATGCCCTCCTTGTC-TTGAATCTTGCTCTTGACATTG-TCGATCGTGTCACTGGATTCG 40840 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||||||||| || || || |||||||| Sbjct 40839 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 40790 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||||||| | || || | || | | ||||| || ||||||||||| || Sbjct 41473 GCCACCTCGCAATCTCAGCACAAGGTGCAGTGTAGACTCTTTCTGAATGTTGTAATCTGA 41414 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || ||||| || | |||| | ||||| ||||| || || Sbjct 41413 CAAGGTTCGACCATCCTCCAGCTGTTTGCCTGCGAAGATCAACCGCTGCTGGTCTGGTGG 41354 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| || | | || | ||| || | || ||||| Sbjct 41353 AATACCTTCCTTGTCTTGGATTTTCGACTTAACGTTATCGATGGTATCAGATGATTCCAC 41294 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| || | ||||| || || |||||||| |||||||| |||||| Sbjct 41293 TTCGAGTGTTATGGTTTTGCCTGTGAGAGTTTTGACAAAAATTTGCATG 41245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261053888240